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GT20471

CSHL Arabidopsis genetrap mutant lines

Original: GT20471

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT20471

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 918093 [Map]; Strand: c
      • AT2G03090.1 - [+] show detail - expansin A15
        Distance: 0; Region: exon3 (CDS)
    Flanking Genome Sequence: GT20471 - 5-prime edge
    CGGCGGCGTT GAGCACTGCT CTGTTCAACA ACGGTCTTAG CTGCGGGGCT 
    TGTTTTGAGA TCAAGTGTCA GAGCGACGGC GCGTGGTGTT TACCTGGTGC
    TATCATTGTC ACAGCCACCA ATTTCTGTCC TCCTAACAAC GCTCTTCCCA
    ATAACGCTGG TGGTTGGTGT AACCCTCCGC TTCATCTCTC TCGA

AT2G03090.1

Model type
Protein coding
Short Description
expansin A15
Curator Summary
member of Alpha-Expansin Gene Family. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio). Involved in the formation of nematode-induced syncytia in roots of Arabidopsis thaliana.
Computational Description
expansin A15 (EXPA15); INVOLVED IN: plant-type cell wall modification involved in multidimensional cell growth, syncytium formation, unidimensional cell growth, plant-type cell wall loosening; LOCATED IN: endomembrane system, extracellular region; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pollen allergen, N-terminal (InterPro:IPR014734), Rare lipoprotein A (InterPro:IPR005132), Pollen allergen/expansin, C-terminal (InterPro:IPR007117), Barwin-related endoglucanase (InterPro:IPR009009), Expansin (InterPro:IPR002963), Expansin/Lol pI (InterPro:IPR007118), Expansin 45, endoglucanase-like (InterPro:IPR007112); BEST Arabidopsis thaliana protein match is: expansin A1 (TAIR:AT1G69530.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR