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GT20955

CSHL Arabidopsis genetrap mutant lines

Original: GT20955

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT20955

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 29494507 [Map]; Strand: w
      • AT1G78390.1 - [+] show detail - nine-cis-epoxycarotenoid dioxygenase 9
        Distance: -1632; Region: intergenic
      • AT1G78400.1 - [+] show detail - Pectin lyase-like superfamily protein
        Distance: 3774; Region: intergenic
    Flanking Genome Sequence: GT20955 - 5-prime edge 
    AAATTGCTAT CGTAAATTTT CCAATGAAGT TTTGTATTAT GTTATTTAGA 
    GAAATTGGGA TTAAAAAATT GTGTATATTG GGTTATGCAG AATAAAGTCT 
    TATAGTATAC ATGAAATATT CTAACAAGAG ATTCGGACCA TTCGGTTAAG 
    AAGAAGAAAA GAAAAAAGAT TCGGTTATAC AAAATTAGGT TGAGTGATTA 
    ACTTAAGTTG GTTGGTGATG ACCATTATCG TTGAGTAAAC ACCCACTTGA 
    AAATTGAAAT GAAGCAATCG TAGATGCATC ACAGTCCACT AATTACATTA 
    ATCATTTTAA TATATTCTTA ATTAACGGAA CATCCAGGCT TCAGGTGTTC 
    ATCTCACTCG A

AT1G78390.1

Model type
Protein coding
Short Description
nine-cis-epoxycarotenoid dioxygenase 9
Curator Summary
Encodes 9-cis-epoxycarotenoid dioxygenase, a key enzyme in the biosynthesis of abscisic acid. The expression of this gene increases during the first 6h of imbibition.
Computational Description
nine-cis-epoxycarotenoid dioxygenase 9 (NCED9); CONTAINS InterPro DOMAIN/s: Carotenoid oxygenase (InterPro:IPR004294); BEST Arabidopsis thaliana protein match is: nine-cis-epoxycarotenoid dioxygenase 3 (TAIR:AT3G14440.1); Has 2892 Blast hits to 2853 proteins in 497 species: Archae - 16; Bacteria - 810; Metazoa - 240; Fungi - 201; Plants - 889; Viruses - 0; Other Eukaryotes - 736 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G78400.1

Model type
Protein coding
Short Description
Pectin lyase-like superfamily protein
Computational Description
Pectin lyase-like superfamily protein; FUNCTIONS IN: polygalacturonase activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Pectin lyase fold/virulence factor (InterPro:IPR011050), Glycoside hydrolase, family 28 (InterPro:IPR000743), Pectin lyase fold (InterPro:IPR012334); BEST Arabidopsis thaliana protein match is: glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein (TAIR:AT2G33160.1); Has 3713 Blast hits to 3693 proteins in 464 species: Archae - 4; Bacteria - 847; Metazoa - 14; Fungi - 1259; Plants - 1481; Viruses - 0; Other Eukaryotes - 108 (source: NCBI BLink).
Link
InterPro Scan - TAIR