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GT21061

CSHL Arabidopsis genetrap mutant lines

Original: GT21061

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT21061

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 10056530 [Map]; Strand: w
      • AT1G28610.1 - [+] show detail - GDSL-like Lipase/Acylhydrolase superfamily protein
        Distance: -849; Region: promoter
      • AT1G28610.2 - [+] show detail - GDSL-like Lipase/Acylhydrolase superfamily protein
        Distance: -799; Region: promoter
      • AT1G28620.1 - [+] show detail - pseudogene, lipase, similar to lipase Arab-1 GB:S68410 GI:2129636 (Arabidopsi...
        Distance: 0; Region: exon1 (NonCoding)
    Flanking Genome Sequence: GT21061 - 5-prime edge 
    ATACTCAGAA GGAACTCGAC AATGTTTCAC TCCTCTAGAC CCACATGGCT 
    TATCAACAGT GAAGGTCTCT CCATAAATCC TTCAAAAGAG TAAATTTGGT 
    AATATAAATA ATTGTGACAA TACTGTATAT ATGTTAGTTA AGGGGACGGA 
    ATAAGAAAGG GCAACATATT TCGTCGGTTC AAGGTAAAAA TGTAACACAA 
    TGTCGTAGTA GTCAGTGTAT CTGATAGTAG CAATAGGATA GAGTTTTTGG 
    AGTCTATTGA GTTCTGTCTG AAGCTGCTCA TTGTGGTACT GAGAAAACTC 
    ATTAGGCCAC TTCAAACATC CGGTTAAAGC ATCGTAGTCC TTCATC

AT1G28610.1

Model type
Protein coding
Short Description
GDSL-like Lipase/Acylhydrolase superfamily protein
Computational Description
GDSL-like Lipase/Acylhydrolase superfamily protein; FUNCTIONS IN: lipase activity, carboxylesterase activity; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: GDSL-like Lipase/Acylhydrolase superfamily protein (TAIR:AT1G28600.2); Has 2710 Blast hits to 2687 proteins in 65 species: Archae - 0; Bacteria - 21; Metazoa - 0; Fungi - 0; Plants - 2689; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G28610.2

Model type
Protein coding
Short Description
GDSL-like Lipase/Acylhydrolase superfamily protein
Computational Description
GDSL-like Lipase/Acylhydrolase superfamily protein; FUNCTIONS IN: lipase activity, hydrolase activity, acting on ester bonds, carboxylesterase activity; INVOLVED IN: lipid metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Lipase, GDSL (InterPro:IPR001087); BEST Arabidopsis thaliana protein match is: GDSL-like Lipase/Acylhydrolase superfamily protein (TAIR:AT2G27360.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G28620.1

Model type
Pseudogene
Computational Description
pseudogene, lipase, similar to lipase Arab-1 GB:S68410 GI:2129636 (Arabidopsis thaliana); blastp match of 44% identity and 1.2e-48 P-value to GP|7523500|dbj|BAA94228.1||AP001633 unnamed protein product {Oryza sativa (japonica cultivar-group)}
Link
InterPro Scan - TAIR