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GT21474

CSHL Arabidopsis genetrap mutant lines

Original: GT21474

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT21474

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 9540206 [Map]; Strand: c
      • AT2G22470.1 - [+] show detail - arabinogalactan protein 2
        Distance: -1327; Region: intergenic
      • AT2G22475.1 - [+] show detail - GRAM domain family protein
        Distance: -1195; Region: intergenic
    Flanking Genome Sequence: GT21474 - 5-prime edge 
    ATATCAGAGT TTATTGTACA ATCTACAATA ATAACATCTA ATGGAGTTTT 
    TTTTTTTGGG AAAAGGACCC CCAAGGGGGA ATTGTTTATT TAAAATTCCA 
    AACAAAAAAA AACCATTTGA AATCCCCGGG AATTTTTTTA ACCCCGGGGA 
    TTTTTTTTAA GGGTTCCAAA AGGTCCTTTT TTCTTTAAGG GAAAAAAATA 
    AAAAATAAAA AACCAAACCA AAACCCCCCC TAAAACCTAA AATTTTTCCA 
    AAAAAGGGAA ACGGGAAACC CCCTTGGGGC TGGAAAAAAA ACAAAAATTT 
    CCAAGGTTAG CCCCCCCCCC CAAAAACCAA AAAAAAAGGG CCGGCCAGGG 
    CCCCCCCCAA CCGTAACCCC CAAACCAAAT TATTTAAAAT TCCTTTTGGG 
    AACCTTTTTA AAAATTCCAT TGGGCCAAAC CGGGGGGAAA AAAAATTTTT 
    CCCCTTTAAT TTTTCTTAAG AAAAAAAACC GGAACCAAGG CATTTTAGGG 
    CCAAACCAAA ACCCCACCAT TTTATTTTTC AGGAAAAAAA AAAAA

AT2G22470.1

Model type
Protein coding
Short Description
arabinogalactan protein 2
Curator Summary
Encodes arabinogalactan-protein (AGP2).
Computational Description
arabinogalactan protein 2 (AGP2); BEST Arabidopsis thaliana protein match is: arabinogalactan protein 3 (TAIR:AT4G40090.1); Has 40526 Blast hits to 18637 proteins in 1352 species: Archae - 307; Bacteria - 12509; Metazoa - 8294; Fungi - 3358; Plants - 6174; Viruses - 1616; Other Eukaryotes - 8268 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G22475.1

Model type
Protein coding
Short Description
GRAM domain family protein
Curator Summary
Encodes GL2-expression modulator (GEM). Involved in the spatial control of cell division, patterning and differentiation of Arabidopsis root epidermal cells. GEM interacts with CDT1, a DNA replication protein and TTG1 (TRANSPARENT TESTA GLABRA1), a WD40-repeat protein involved in GL2-dependent cell fate decision. GEM seems to participate in the maintenance of a repressor histone H3 epigenetics status of the GL2 and CPC (CAPRICE) promoters.
Computational Description
GL2-EXPRESSION MODULATOR (GEM); CONTAINS InterPro DOMAIN/s: GRAM (InterPro:IPR004182); BEST Arabidopsis thaliana protein match is: GRAM domain family protein (TAIR:AT4G40100.1); Has 360 Blast hits to 359 proteins in 24 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 359; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR