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GT21520

CSHL Arabidopsis genetrap mutant lines

Original: GT21520

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT21520

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 18168823 [Map]; Strand: c
      • AT3G49010.1 - [+] show detail - breast basic conserved 1
        Distance: -243; Region: promoter
      • AT3G49010.2 - [+] show detail - breast basic conserved 1
        Distance: -131; Region: promoter
      • AT3G49010.3 - [+] show detail - breast basic conserved 1
        Distance: -178; Region: promoter
      • AT3G49010.4 - [+] show detail - breast basic conserved 1
        Distance: -131; Region: promoter
      • AT3G49010.5 - [+] show detail - breast basic conserved 1
        Distance: -133; Region: promoter
      • AT3G49020.1 - [+] show detail - FBD, F-box and Leucine Rich Repeat domains containing protein
        Distance: -256; Region: promoter
    Flanking Genome Sequence: GT21520 - 5-prime edge 
    ATACAAAACC CTAACAGAAT AAAAACAGTG ATCAAATCTC GAGCCGGATC 
    GTTTTTTTCC AATGAAACCA AAATCCAAAC CCAAGACATT TACAAGCCCA 
    AAGAATAAAA ATTGATTTTT TTTTTTTCGG CCCCCCGGCC CAAAAACAAA 
    AAGTAAAACG GAGTTAAGGC CTCCCCAATT TAAAGCCCGA AACCCCAAAA 
    CTGGAAAAAA CTTCAGCCAA AACCCCCCCA AAAAAACAAT CCCCCCGGGG 
    AGTTTCCCCC CCCCCCAACT TGCCCCCCCC CGAATAACCT CCGTGGCACC 
    GGCCCCGTTT GGGGAAAAAA AAGGGTCCTG GCTTGTTTCC CCCCACCGGG 
    GGTCCGGCGG CAACCCCCGG AAAATTTTTC AAAGTCCCTG GTTTTGTCCT 
    CCCCCCC

AT3G49010.1

Model type
Protein coding
Short Description
breast basic conserved 1
Curator Summary
Encodes 60S ribosomal protein L13. Homolog of human breast basic conserved 1 (BBC1).
Computational Description
breast basic conserved 1 (BBC1); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation, ribosome biogenesis; LOCATED IN: in 8 components; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L13e, conserved site (InterPro:IPR018256), Ribosomal protein L13e (InterPro:IPR001380); BEST Arabidopsis thaliana protein match is: Ribosomal protein L13e family protein (TAIR:AT5G23900.1); Has 738 Blast hits to 738 proteins in 281 species: Archae - 1; Bacteria - 0; Metazoa - 292; Fungi - 166; Plants - 147; Viruses - 0; Other Eukaryotes - 132 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G49010.2

Model type
Protein coding
Short Description
breast basic conserved 1
Curator Summary
Encodes 60S ribosomal protein L13. Homolog of human breast basic conserved 1 (BBC1).
Computational Description
breast basic conserved 1 (BBC1); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation, ribosome biogenesis; LOCATED IN: in 8 components; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L13e, conserved site (InterPro:IPR018256), Ribosomal protein L13e (InterPro:IPR001380); BEST Arabidopsis thaliana protein match is: Ribosomal protein L13e family protein (TAIR:AT5G23900.1); Has 738 Blast hits to 738 proteins in 281 species: Archae - 1; Bacteria - 0; Metazoa - 292; Fungi - 166; Plants - 147; Viruses - 0; Other Eukaryotes - 132 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G49010.3

Model type
Protein coding
Short Description
breast basic conserved 1
Curator Summary
Encodes 60S ribosomal protein L13. Homolog of human breast basic conserved 1 (BBC1).
Computational Description
breast basic conserved 1 (BBC1); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation, ribosome biogenesis; LOCATED IN: in 8 components; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L13e, conserved site (InterPro:IPR018256), Ribosomal protein L13e (InterPro:IPR001380); BEST Arabidopsis thaliana protein match is: Ribosomal protein L13e family protein (TAIR:AT5G23900.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G49010.4

Model type
Protein coding
Short Description
breast basic conserved 1
Curator Summary
Encodes 60S ribosomal protein L13. Homolog of human breast basic conserved 1 (BBC1).
Computational Description
breast basic conserved 1 (BBC1); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation, ribosome biogenesis; LOCATED IN: in 6 components; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L13e, conserved site (InterPro:IPR018256), Ribosomal protein L13e (InterPro:IPR001380); BEST Arabidopsis thaliana protein match is: Ribosomal protein L13e family protein (TAIR:AT5G23900.1); Has 743 Blast hits to 743 proteins in 279 species: Archae - 1; Bacteria - 0; Metazoa - 292; Fungi - 163; Plants - 147; Viruses - 0; Other Eukaryotes - 140 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G49010.5

Model type
Protein coding
Short Description
breast basic conserved 1
Curator Summary
Encodes 60S ribosomal protein L13. Homolog of human breast basic conserved 1 (BBC1).
Computational Description
breast basic conserved 1 (BBC1); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation, ribosome biogenesis; LOCATED IN: in 6 components; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L13e (InterPro:IPR001380); BEST Arabidopsis thaliana protein match is: Ribosomal protein L13e family protein (TAIR:AT5G23900.1); Has 742 Blast hits to 736 proteins in 276 species: Archae - 0; Bacteria - 0; Metazoa - 295; Fungi - 161; Plants - 147; Viruses - 0; Other Eukaryotes - 139 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G49020.1

Model type
Protein coding
Short Description
FBD, F-box and Leucine Rich Repeat domains containing protein
Computational Description
FBD, F-box and Leucine Rich Repeat domains containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: nucleus; EXPRESSED IN: flower; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: FBD (InterPro:IPR013596), F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364), FBD-like (InterPro:IPR006566), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: FBD, F-box and Leucine Rich Repeat domains containing protein (TAIR:AT3G49030.1); Has 1936 Blast hits to 1896 proteins in 26 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 1935; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR