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GT21657

CSHL Arabidopsis genetrap mutant lines

Original: GT21657

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT21657

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 5193175 [Map]; Strand: c
      • AT1G15090.1 - [+] show detail - pre-tRNA
        Distance: -3415; Region: intergenic
      • AT1G15100.1 - [+] show detail - RING-H2 finger A2A
        Distance: 251; Region: intergenic
    Flanking Genome Sequence: GT21657 - 5-prime edge 
    TTTCTATATC AGATTCATGT TTGTTTTTTT GGTTTAATGT TAAACAGAGT 
    CATGTTTTGT ACGTCTTTAT TGTACAGACG AACCAGTGAG GTCAATCATT 
    ATTATTGAAC TTTTTTGAAC CATGAGTGAT TTTTTAGTTG AAGATTCATC 
    CCTAAGAAAT TGAATCCCAT CCACTTCTTT TACAAATTGA AGGAGTGGAA 
    AAGGTTTATA TTCCAATTTC AGTTTGCAAT GTTTTTCATA TGTAATTTTT 
    TCCATTTGTA TAAATTTTTT GGACCATCTC TCTTTTACCT TTAGAGAACT 
    CTGTGGGCTT ATTAATTTGT CACGATAACA GACAAGATGG GCTTAGAAAT 
    AATTATAGAT TAGGCCCGTT AACATTATAG ATTAGCCTTG TTTTGGCTCC 
    GAATGACGAG CCTTTTCTAA CACAACAAAA TGTACTATCT TCAACATTTT 
    TCTACATACA TATATATAAA GTTGATTTTC TGCTTTTCTT AGCTTAGTTT 
    ACCAACTCAA AACGTTGTAT GAGAGTTCTT TAGGTGAATT AAATGGGAAA 
    TGAGTCACAA CTAAATATAA GCAGTTCAAT TCCTCAAGAT TCAACTCATC 
    ATAATCCATT TGATGTTAAT AATGATACTA CAGTGTCTTC TTTATTTGAA 
    ATGTAACTTT TGTTATATAG TAGTTGATAA TACCATCACC ACAAGGACAC 
    TCTTC

AT1G15090.1

Model type
Pre-tRNA
Short Description
pre-tRNA
Computational Description
tRNA-Asn (anticodon: GTT)
Link
InterPro Scan - TAIR

AT1G15100.1

Model type
Protein coding
Short Description
RING-H2 finger A2A
Curator Summary
Encodes a putative RING-H2 finger protein RHA2a.
Computational Description
RING-H2 finger A2A (RHA2A); FUNCTIONS IN: ubiquitin-protein ligase activity, zinc ion binding; INVOLVED IN: response to salt stress, positive regulation of abscisic acid mediated signaling pathway, regulation of response to osmotic stress; LOCATED IN: endomembrane system; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING-H2 finger protein 2B (TAIR:AT2G01150.1); Has 8620 Blast hits to 8597 proteins in 260 species: Archae - 0; Bacteria - 0; Metazoa - 2194; Fungi - 672; Plants - 4576; Viruses - 12; Other Eukaryotes - 1166 (source: NCBI BLink).
Link
InterPro Scan - TAIR