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GT21767

CSHL Arabidopsis genetrap mutant lines

Original: GT21767

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT21767

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 19063142 [Map]; Strand: c
      • AT2G46440.1 - [+] show detail - cyclic nucleotide-gated channels
        Distance: 0; Region: exon4 (CDS)
    Flanking Genome Sequence: GT21767 - 5-prime edge 
    CATGCATCAA TATACATACC AAAGTCGAAG TCTGTAGAGT TTGTGATTTG 
    GGCAGGGTCG ATTAATGGGC ATGAGGTGTT GAGAAAACGA ATGTTGTCAC 
    TACCAGCTCG TTTACAAAGC AGATCCGTGA CCGTGAGATT GCAGTCGGAT 
    GTCCTAGCAC ACGCGGCACG CCAACATGTG CTTTTCCTTT CTATTGAACT 
    CAAGTACCAA AAAGCCCCAA ACACCTATAT ACATAGTAGC CATCCATCAT 
    GCACAGTTGC AACAACAACA ACACCAACAG TGGGTGGGAA GTGGGATCAA 
    GAGCAAAGAC TTACATAACT GTGCAGCATG TAAAGGAAGA AGTTTAAAGC 
    AGCTCCGACC CGCTTTGATT CTGCTACCGT ACCAAAGGCT TTTGTCACTT 
    CTTTATAAAG CGGATACATA CGAATGATTC TTGGTACATA TTGACTAAGT 
    ATAATCCATT TCAGTATTCT CTCAGACAGT GGTATGAGAG TGAGAACCAC 
    CACCTATAAT TACGCATGTA CATCTCTAAT AAAAAGCATG GAAAAGTAGA 
    TGTCACACAC AAAACGAAGA GAGCAATACC TGAGGAATGG GGAGAACAGA 
    GATAATGTCA ACAATGAAGT GAAAGAGGAG ACGTGTTTTC AGTGTAGCCT 
    TAGAATGCAC GACAATCTCG CCTCTCAAAG ATGCTTGAGA ACGAGGAGCA 
    ATGGTCTCGG TTATAAGATA ATAAATGATG TGAATCACAT AGAACGTGTC 
    AATAAAAGTA CGAATGACAC AAACTACTGC TACAAGTGTC TTGTCGAAAG 
    TGA

AT2G46440.1

Model type
Protein coding
Short Description
cyclic nucleotide-gated channels
Curator Summary
Member of Cyclic nucleotide gated channel family. Positive regulator of resistance against avirulent fungal pathogen.
Computational Description
cyclic nucleotide-gated channels (CNGC11); FUNCTIONS IN: ion channel activity, cyclic nucleotide binding, calmodulin binding, cation channel activity; INVOLVED IN: response to fungus; LOCATED IN: membrane; CONTAINS InterPro DOMAIN/s: Cyclic nucleotide-binding (InterPro:IPR000595), Ion transport (InterPro:IPR005821), Cyclic nucleotide-binding-like (InterPro:IPR018490), RmlC-like jelly roll fold (InterPro:IPR014710); BEST Arabidopsis thaliana protein match is: cyclic nucleotide-gated channel 12 (TAIR:AT2G46450.1); Has 2962 Blast hits to 2888 proteins in 221 species: Archae - 0; Bacteria - 24; Metazoa - 1476; Fungi - 2; Plants - 940; Viruses - 0; Other Eukaryotes - 520 (source: NCBI BLink).
Link
InterPro Scan - TAIR