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GT21979

CSHL Arabidopsis genetrap mutant lines

Original: GT21979

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT21979

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 22312052 [Map]; Strand: c
      • AT1G60560.2 - [+] show detail - SWIM zinc finger family protein
        Distance: -702; Region: promoter
      • AT1G60560.1 - [+] show detail - SWIM zinc finger family protein
        Distance: -702; Region: promoter
      • AT1G60570.1 - [+] show detail - Galactose oxidase/kelch repeat superfamily protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: GT21979 - 5-prime edge 
    TGTCTGACGA AGCATGAACC AGCGATGGCT ACGGCCAGTA TGAGAGAAAC 
    GTAAGCACAC ATAGAGACAA TTCTCGGTAT AACCTGATAG TGACCGGAAC 
    CGGTAAATCT CTCCTGAAGT AAGGAGCGAG TGGAAGCGCT TGCAGACTAA 
    GGAGAGAGAT CGATAAGACA ATCTCGAGAC GCGGGCTAAG ATACTCAATA 
    TCAACTCCTC TGGAAGTGAA GGAATCAAGG TTGGTTCTTC TACTGGCAGC 
    TTATTCTTCT TCAGCGGTGG CTCTTCATCT TCGCTCATGG CTCAGGTGTT 
    AGGGTTTTGA AATGAATTTT CCCAACTTGG CAAACGTATG TAGTTCATCT 
    CTCTCGACC

AT1G60560.1

Model type
Protein coding
Short Description
SWIM zinc finger family protein
Computational Description
SWIM zinc finger family protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, SWIM-type (InterPro:IPR007527); BEST Arabidopsis thaliana protein match is: zinc ion binding (TAIR:AT4G13970.1); Has 86 Blast hits to 86 proteins in 21 species: Archae - 0; Bacteria - 0; Metazoa - 27; Fungi - 5; Plants - 54; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G60560.2

Model type
Protein coding
Short Description
SWIM zinc finger family protein
Computational Description
SWIM zinc finger family protein; BEST Arabidopsis thaliana protein match is: zinc ion binding (TAIR:AT4G13970.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G60570.1

Model type
Protein coding
Short Description
Galactose oxidase/kelch repeat superfamily protein
Computational Description
Galactose oxidase/kelch repeat superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: flower, cultured cell; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043), Kelch repeat type 1 (InterPro:IPR006652), Kelch related (InterPro:IPR013089), Kelch-type beta propeller (InterPro:IPR015915); BEST Arabidopsis thaliana protein match is: Galactose oxidase/kelch repeat superfamily protein (TAIR:AT1G19930.1); Has 2159 Blast hits to 2040 proteins in 157 species: Archae - 8; Bacteria - 131; Metazoa - 640; Fungi - 8; Plants - 1197; Viruses - 129; Other Eukaryotes - 46 (source: NCBI BLink).
Link
InterPro Scan - TAIR