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GT22447

CSHL Arabidopsis genetrap mutant lines

Original: GT22447

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT22447

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 19062010 [Map]; Strand: w
      • AT2G46440.1 - [+] show detail - cyclic nucleotide-gated channels
        Distance: 0; Region: exon1 (5UTR)
    Flanking Genome Sequence: GT22447 - 5-prime edge 
    TGAGAACATC GATTTGCCAA CCATATCTCA CAGCCACAGC CATTTTTCTT 
    CTCTCTCGGC CTCTCTTCTC AGTCTCTCAC TAACACAGCC TTTAGTTCGA 
    GAAGACCGAA GTGGACTTCA TTTTCCTGGA CGAGAATTAA AATATTGCAG 
    ATTGACGACA TATACTAACA TGAATCATCG GAGGAGTATG TTTGCCAGGT 
    ACTTCTTCGA AGTTTTGATT AACTATTATT TCATATTTGG TTGTGTAGTG 
    ATCATATCTT GTTGATACAG GCTTGATAGT ACGGGAGTTG ATGGAAAATT 
    CAAAAGTGTT AGAGGGCGCT TGAAGAAGGT TTACGGGAAG ATGAAAACAC 
    TCGAAAACTG GAGGAAGACC GTCTTGTTAG CTTGCGTGGT TGCTTTGGCT 
    ATTGATCCTT TGTTTCTGTT TATCCCTTTG ATTGATTCTC AGAGATTTTG 
    CTTCACTTTC GACAAGACAC TTGTAGCAGT AGTTTGTGTC ATTCGTACTT 
    TTATTGACAC GTTCTATGTG ATTCACATCA TTTATTATCT TATAACCGAG 
    ACCATTGCTC CTCGTTCTCA AGCATCTTTG AGAGGCGAGA TTGTCGTGCA 
    TTCTAAGGCT ACACTGAAAA CACGTCTCCT CTTTCA

AT2G46440.1

Model type
Protein coding
Short Description
cyclic nucleotide-gated channels
Curator Summary
Member of Cyclic nucleotide gated channel family. Positive regulator of resistance against avirulent fungal pathogen.
Computational Description
cyclic nucleotide-gated channels (CNGC11); FUNCTIONS IN: ion channel activity, cyclic nucleotide binding, calmodulin binding, cation channel activity; INVOLVED IN: response to fungus; LOCATED IN: membrane; CONTAINS InterPro DOMAIN/s: Cyclic nucleotide-binding (InterPro:IPR000595), Ion transport (InterPro:IPR005821), Cyclic nucleotide-binding-like (InterPro:IPR018490), RmlC-like jelly roll fold (InterPro:IPR014710); BEST Arabidopsis thaliana protein match is: cyclic nucleotide-gated channel 12 (TAIR:AT2G46450.1); Has 2962 Blast hits to 2888 proteins in 221 species: Archae - 0; Bacteria - 24; Metazoa - 1476; Fungi - 2; Plants - 940; Viruses - 0; Other Eukaryotes - 520 (source: NCBI BLink).
Link
InterPro Scan - TAIR