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GT22630

CSHL Arabidopsis genetrap mutant lines

Original: GT22630

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT22630

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 5821630 [Map]; Strand: w
      • AT4G09140.1 - [+] show detail - MUTL-homologue 1
        Distance: -593; Region: promoter
      • AT4G09143.1 - [+] show detail - pseudogene, type 2 peroxiredoxin -related, similar to type 2 peroxiredoxin, p...
        Distance: 0; Region: exon1 (NonCoding)
    Flanking Genome Sequence: GT22630 - 5-prime edge 
    GTTACTAGGG TTTTGGTTTG GAATCCGTAT TGGGGGCATA CAAGGTGGAT 
    CAACCTCCGA TATTCTCAAC CTCCGAATGG ATTTGATAGG TTTAGTTATG 
    CTCTTGGATA CGAAGATAAG GAATCTTGTC GTACCTTTAA GTTCTTGAGG 
    TTTCTAGACT ATTTCTACAA TACACCCGAA ACACAATTTT TTTGGTATGA 
    AATCTATGAT TTTGACTCGG GTTTATGGAC AACTCTTCAT CTCTCTCGA

AT4G09140.1

Model type
Protein coding
Short Description
MUTL-homologue 1
Curator Summary
Encodes a protein with similarity to Mut1 DNA mismatch repair protein, from E.coli. The protein is expressed during prophase I of meiosis, colocalizes with MLH3 throughout pachytene and is dependent on MLH3 for proper localization.
Computational Description
MUTL-homologue 1 (MLH1); FUNCTIONS IN: protein binding, bridging; INVOLVED IN: in 6 processes; LOCATED IN: nuclear chromatin; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: DNA mismatch repair protein Mlh1 (InterPro:IPR011186), DNA mismatch repair, conserved site (InterPro:IPR014762), ATPase-like, ATP-binding domain (InterPro:IPR003594), DNA mismatch repair protein, C-terminal (InterPro:IPR013507), DNA mismatch repair protein, N-terminal (InterPro:IPR014763), Ribosomal protein S5 domain 2-type fold (InterPro:IPR020568), DNA mismatch repair protein (InterPro:IPR002099), Ribosomal protein S5 domain 2-type fold, subgroup (InterPro:IPR014721); BEST Arabidopsis thaliana protein match is: DNA mismatch repair protein, putative (TAIR:AT4G02460.1); Has 6802 Blast hits to 6727 proteins in 2342 species: Archae - 68; Bacteria - 4480; Metazoa - 469; Fungi - 496; Plants - 114; Viruses - 0; Other Eukaryotes - 1175 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G09143.1

Model type
Pseudogene
Computational Description
pseudogene, type 2 peroxiredoxin -related, similar to type 2 peroxiredoxin, putative
Link
InterPro Scan - TAIR