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GT22749

CSHL Arabidopsis genetrap mutant lines

Original: GT22749

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT22749

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 19498890 [Map]; Strand: w
      • AT1G52350.1 - [+] show detail - pre-tRNA
        Distance: -398; Region: promoter
      • AT1G52360.1 - [+] show detail - Coatomer, beta' subunit
        Distance: -272; Region: promoter
      • AT1G52360.2 - [+] show detail - Coatomer, beta' subunit
        Distance: -453; Region: promoter
    Flanking Genome Sequence: GT22749 - 5-prime edge 
    AATATCAGAA ATAGCTTCAT CAATAAGTGA GAAGAAGTCC ACCTAGTGCC 
    ATTGACTCTA TAATCTGTGA CTTGTGTAAA CTTTTCCATT ACACTCCCTT 
    TTTTTTTTTC CCCCCCCTTA ACCCCCCCAA AAAAAATTTT TCAAGGGGGG 
    GAAGGGAGAA GGGGGGGGAA TTTCAGTTTA GGGGGGGGGA GGGGTTTTAA 
    TAAGGGAACC TTTTCAACCC CTGGGGGCAC CAATTTAATT GAAAAAAAAA 
    AAAGGGTTTG AAAGGCCCAA ACCCCAGGGG GAATTTCGAA AAGGGCCCAC 
    CCAAGGCCTT TTAAAAAAAA AATTTCCCAT TTTCGGAATT TAAAGTTTTT 
    TTCCCAACCA CCCGAGCAAA ACCCCCTTGG TTCTTCCATC CCCAAATTGG 
    AAAATTAAGG GAAAAAAAAA AAACCCAAGG GGCCCAAAAA CCTTTTCACC 
    CTAAAACGGG AAATAAGGGG AATTTGGGAA CCTTTCCCCC CATTTTGGGT 
    TTTCC

AT1G52350.1

Model type
Pre-tRNA
Short Description
pre-tRNA
Computational Description
tRNA-Arg (anticodon: TCG)
Link
InterPro Scan - TAIR

AT1G52360.1

Model type
Protein coding
Short Description
Coatomer, beta' subunit
Computational Description
Coatomer, beta' subunit; FUNCTIONS IN: structural molecule activity; INVOLVED IN: intracellular protein transport, vesicle-mediated transport; LOCATED IN: membrane coat, COPI vesicle coat; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), Coatomer, WD associated region (InterPro:IPR006692), Cytochrome cd1-nitrite reductase-like, C-terminal haem d1 (InterPro:IPR011048), WD40 repeat (InterPro:IPR001680), G-protein beta WD-40 repeat, region (InterPro:IPR020472), WD40 repeat-like-containing domain (InterPro:IPR011046), Coatomer, beta' subunit (InterPro:IPR016453), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: Coatomer, beta' subunit (TAIR:AT3G15980.3); Has 77726 Blast hits to 33438 proteins in 848 species: Archae - 64; Bacteria - 8410; Metazoa - 31451; Fungi - 17403; Plants - 9943; Viruses - 42; Other Eukaryotes - 10413 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G52360.2

Model type
Protein coding
Short Description
Coatomer, beta' subunit
Computational Description
Coatomer, beta' subunit; FUNCTIONS IN: structural molecule activity; INVOLVED IN: intracellular protein transport, vesicle-mediated transport; LOCATED IN: membrane coat, COPI vesicle coat; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), Coatomer, WD associated region (InterPro:IPR006692), Cytochrome cd1-nitrite reductase-like, C-terminal haem d1 (InterPro:IPR011048), WD40 repeat (InterPro:IPR001680), G-protein beta WD-40 repeat, region (InterPro:IPR020472), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), Coatomer, beta' subunit (InterPro:IPR016453), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: Coatomer, beta' subunit (TAIR:AT3G15980.3).
Link
InterPro Scan - TAIR