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GT23301

CSHL Arabidopsis genetrap mutant lines

Original: GT23301

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT23301

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 9345162 [Map]; Strand: w
      • AT1G26940.1 - [+] show detail - Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein
        Distance: 17; Region: intergenic
      • AT1G26945.1 - [+] show detail - basic helix-loop-helix (bHLH) DNA-binding superfamily protein
        Distance: -6292; Region: intergenic
    Flanking Genome Sequence: GT23301 - 5-prime edge 
    TTTGTAGTTA ACAGTGTAAA CAGTTTGAGA CATTGAATCA TGGATTGTTT 
    CCCCCTTTGT CTGCAAAAAT CTGATAGTCA CCGGGACAAA ATCCCCCGTT 
    CTGAGCACCA AATAGTCAAA TACTGAACTA GTGAAATAAG CTTGGAGCAA 
    ATAGCAACAA CACATGTGCT CTGCTTTTGT GCTCTTCTCT CTCCAAAAAA 
    ACAAAGCATG TCTCTCAATT CACACAATTA GTCTTTTCAC TTTCGTTGAC 
    TTTTGTCTCT TCCTTCATCT CACTCGA

AT1G26940.1

Model type
Protein coding
Short Description
Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein
Computational Description
Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein; FUNCTIONS IN: peptidyl-prolyl cis-trans isomerase activity; INVOLVED IN: protein folding; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cyclophilin-like (InterPro:IPR015891), Peptidyl-prolyl cis-trans isomerase, cyclophilin-type (InterPro:IPR002130); BEST Arabidopsis thaliana protein match is: cyclophilin71 (TAIR:AT3G44600.1); Has 11471 Blast hits to 11465 proteins in 2220 species: Archae - 104; Bacteria - 5913; Metazoa - 1282; Fungi - 864; Plants - 581; Viruses - 0; Other Eukaryotes - 2727 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G26945.1

Model type
Protein coding
Short Description
basic helix-loop-helix (bHLH) DNA-binding superfamily protein
Curator Summary
Encodes a basic helix-loop-helix (bHLH) protein involved in blue/far-red light signaling. Physically interacts with HFR1 and negatively regulates its activity.
Computational Description
KIDARI (KDR); FUNCTIONS IN: transcription regulator activity; INVOLVED IN: response to light stimulus; LOCATED IN: nucleus, chloroplast; CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) DNA-binding family protein (TAIR:AT3G28857.1); Has 97 Blast hits to 97 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 97; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR