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GT23335

CSHL Arabidopsis genetrap mutant lines

Original: GT23335

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT23335

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 16319545 [Map]; Strand: w
      • AT4G34060.2 - [+] show detail - demeter-like protein 3
        Distance: 119; Region: intergenic
      • AT4G34065.1 - [+] show detail
        Distance: -1795; Region: intergenic
    Flanking Genome Sequence: GT23335 - 5-prime edge 
    TTGGATTGGT GGCGGTGTCA TTCAAAGCCG AGTTTATGTT TCTGGTGTGA 
    AGGTCCTTGA GTGAAGGATT TCAGGAACTG TCTCCCTGCT TCTTCCCACT 
    TTGTTGTGCA ACTTTTATTT TCTCTTTGTT ATAAGCAAGC CTATATGTAT 
    CAATGATACA GTATCATCTA TTGTTCAAAA AAATTGGAAT TAATATCTTC 
    TTCGTCTCAA CATCTTTGGG TCGATCGTTA TTCGATGACA GTAGCAACTA 
    CCGAGTCTCT TGTGATATAT CCTAGCCAAG CGACCTCAAA ACTTTTTTTA 
    CTTCGATTGT TGTCAGTATT TCTGTTTCAG ACGTTTTTAG CAAAAAAGTT 
    CTCATGGTGA TAAAAATAGG CTTTAAACAG TATGACTCTG TCTTTAAGAC 
    TCAGTTTCAG ATA

AT4G34060.2

Model type
Protein coding
Short Description
demeter-like protein 3
Curator Summary
Encodes a protein with 5-meC and thymine-DNA glycosylase activity with a preference for CpG and CpHpG sequences. Involved in maintaining methylation marks.
Computational Description
demeter-like protein 3 (DML3); CONTAINS InterPro DOMAIN/s: DNA glycosylase (InterPro:IPR011257), Endonuclease III-like, iron-sulphur cluster loop motif (InterPro:IPR003651), HhH-GPD domain (InterPro:IPR003265); BEST Arabidopsis thaliana protein match is: HhH-GPD base excision DNA repair family protein (TAIR:AT5G04560.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G34065.1

Model type
Pseudogene
Curator Summary
Pseudogene of AT5G06265; hyaluronan mediated motility receptor-related
Link
InterPro Scan - TAIR