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Mutant Lines
GT23556

GT23556

CSHL Arabidopsis genetrap mutant lines

Original: GT23556

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT23556

Determination of insertion point(s)

3 prime edge [+] show sequence

Chromosome: 5; Position: 2210193 [Map]; Strand: w
- AT5G07120.1 - [+] show detail - sorting nexin 2B
  Distance: -677; Region: promoter
- AT5G07130.1 - [+] show detail - laccase 13
  Distance: -374; Region: promoter

TTTTACCGAC CGTTACCGAC CGTTTTCATC CCTAGTCATC AATCATCATC 
AACTTGTCCC CAAGTTGAGT TTGATTTTCT CAGTCATCAA TGTGTTTTCA 
AAAACGAAGA ATAAGAATGA AAACAGCTAC CTTTTTTAGA CATGAGACAT 
CTGCTGCCTC AGCTTCTCCA GAAATTTCAG TGACTTTGAG TGCTTCAAAG 
ACATTACTGA AAGTGATAAA AATTCTCTAA AACCTCGAGA ACTGTTTACT 
CTTCTCTCAT ATGAAGAAAG AAGTGTCTCC GTATCATAAT CATGCGTTTT 
GCTCTTCTCC AATAGAAAAC AGAGCTTTAA GCTTCTCGCC ATTGGAAACT 
CCATGAGACT ACTACATTCT CATTTCCGAA GAATACAGAA GAGCATAAGG 
TGAAGATAGA ATCGATAGTT TCCCAAATGG CTCGGACCCG GTAACCCCAA 
TTTCGAGTCC CTGAGTTCAT CGGAAATCTT ATTACAGTAG TTGACTCGAT 
ACGGTCGTGG AAGAAAGAAC CAAGTAGACC TATAGTCAGG TCGTTTGGAT 
GCAGAGATAT CTCTACCACA TTTAAGTATA AGAATAATTT GCATATTGGG 
CTGGGCTGGC CTGCTACGGG TCGGGTCAAA ACCCAGCTAA ACACTTTAAC 
GTGACCCGAA AGATATTACT CTTTCCATCC CATCTTCCCC AATTAAGTTA 
TTGACGAGAC TT

AT5G07120.1

Model type: Protein coding
Short Description: sorting nexin 2B
Curator Summary: Encodes sorting nexin SNX2b. SNX2b is peripherally associated with membranes. Involved in vesicular trafficking from endosomes to the vacuole.
Computational Description: sorting nexin 2B (SNX2b); FUNCTIONS IN: phospholipid binding; INVOLVED IN: vesicle-mediated transport, intracellular signaling pathway; LOCATED IN: membrane; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Vps5 C-terminal (InterPro:IPR015404), Phox-like (InterPro:IPR001683); BEST Arabidopsis thaliana protein match is: sorting nexin 2A (TAIR:AT5G58440.1); Has 2399 Blast hits to 2386 proteins in 279 species: Archae - 13; Bacteria - 100; Metazoa - 1366; Fungi - 555; Plants - 146; Viruses - 0; Other Eukaryotes - 219 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT5G07130.1

Model type: Protein coding
Short Description: laccase 13
Curator Summary: putative laccase, a member of laccase family of genes (17 members in Arabidopsis).
Computational Description: laccase 13 (LAC13); FUNCTIONS IN: laccase activity; INVOLVED IN: oxidation reduction, lignin catabolic process; LOCATED IN: endomembrane system, apoplast; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Multicopper oxidase, type 3 (InterPro:IPR011707), Laccase (InterPro:IPR017761), Multicopper oxidase, type 2 (InterPro:IPR011706), Cupredoxin (InterPro:IPR008972), Multicopper oxidase, copper-binding site (InterPro:IPR002355), Multicopper oxidase, type 1 (InterPro:IPR001117); BEST Arabidopsis thaliana protein match is: laccase 3 (TAIR:AT2G30210.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link: InterPro Scan - TAIR