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GT24140

CSHL Arabidopsis genetrap mutant lines

Original: GT24140

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT24140

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 6929882 [Map]; Strand: c
      • AT5G20490.1 - [+] show detail - Myosin family protein with Dil domain
        Distance: 0; Region: exon26 (CDS)
      • AT5G20490.2 - [+] show detail - Myosin family protein with Dil domain
        Distance: 0; Region: exon26 (CDS)
    Flanking Genome Sequence: GT24140 - 3-prime edge 
    TTACCGACCG TTACCGACCG TTTTCATCCC GCACCGGTAA AAGCATTGTT 
    TTTGATCGTG TGGCCATAGT TCTGCTGGTT GGCGAAATAG CAAGTGCCTG 
    TTGACGGAGT ACTTGAATCT CTGACTCTGA ATTCGAAAGC TTCTCTTCTA 
    GTCTGAACAA GAAGCAAAAT CAACATGTAA AAGTCCGGAA CAGAAGAATC 
    ACAGTGATAA CTTATTCAAT CAAGCATCAA ATATAACAAC GATTAGTAAA 
    AGTTTCTTAG CAGTAGTATC AAAAGTACAT GGCTAAGTTA AAGAAGCATG 
    ACAAATTCAA TATGGCCTTT TTCTGTTGAT TGTACATCAA TATATTTTAC 
    GAACCTTTGT ACTGATTCAT GAAGCTGATC TGCTTTTCTT GTAGCATTTT 
    CAAGCTCTGT CGCCAGCTCG GAATTTCTAG CTTCTGCCTC AAAGAAAGCT 
    TTTCTCAAAT TTTCTGCGGC TTGTCGTTCA GCCTGAAGCG AAGCCTGTAA 
    TAAAAGATGT ATTAAACCAA CCAATCCACT TCACGTTATT AAGAGACTAA 
    TGAACATATA TCTACTAACT TTGTTAGTAT ACATAAAGGA TGGTCTAATA 
    CGTGAAAACA CATACCTTTA GAGCTTCCAC CTCTGATGTT AATGAATTGA 
    TTTTTTCA

AT5G20490.1

Model type
Protein coding
Short Description
Myosin family protein with Dil domain
Curator Summary
Encodes a member of the type XI myosin protein family involved in root hair growth, trichome development, and organelle trafficking. This gene appears to be expressed at low levels throughout the plant.
Computational Description
XIK; FUNCTIONS IN: motor activity; INVOLVED IN: in 11 processes; LOCATED IN: endomembrane system, myosin complex; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: seedling growth; CONTAINS InterPro DOMAIN/s: Dil domain (InterPro:IPR018444), Dilute (InterPro:IPR002710), Myosin, N-terminal, SH3-like (InterPro:IPR004009), Myosin head, motor domain (InterPro:IPR001609), IQ calmodulin-binding region (InterPro:IPR000048); BEST Arabidopsis thaliana protein match is: Myosin family protein with Dil domain (TAIR:AT1G54560.1); Has 40570 Blast hits to 26875 proteins in 2480 species: Archae - 466; Bacteria - 5527; Metazoa - 21427; Fungi - 3168; Plants - 2202; Viruses - 135; Other Eukaryotes - 7645 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G20490.2

Model type
Protein coding
Short Description
Myosin family protein with Dil domain
Curator Summary
Encodes a member of the type XI myosin protein family involved in root hair growth, trichome development, and organelle trafficking. This gene appears to be expressed at low levels throughout the plant.
Computational Description
XIK; FUNCTIONS IN: motor activity; INVOLVED IN: in 11 processes; LOCATED IN: myosin complex; EXPRESSED IN: stem, fruit, flower, root, leaf; EXPRESSED DURING: seedling growth; CONTAINS InterPro DOMAIN/s: Dil domain (InterPro:IPR018444), Dilute (InterPro:IPR002710), Myosin head, motor domain (InterPro:IPR001609), IQ calmodulin-binding region (InterPro:IPR000048); BEST Arabidopsis thaliana protein match is: Myosin family protein with Dil domain (TAIR:AT1G54560.1); Has 39115 Blast hits to 25959 proteins in 2421 species: Archae - 443; Bacteria - 5231; Metazoa - 20936; Fungi - 2937; Plants - 2132; Viruses - 125; Other Eukaryotes - 7311 (source: NCBI BLink).
Link
InterPro Scan - TAIR