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GT24155

CSHL Arabidopsis genetrap mutant lines

Original: GT24155

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT24155

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 6930073 [Map]; Strand: w
      • AT5G20490.1 - [+] show detail - Myosin family protein with Dil domain
        Distance: 0; Region: intron25 (CDS)
      • AT5G20490.2 - [+] show detail - Myosin family protein with Dil domain
        Distance: 0; Region: intron25 (CDS)
    Flanking Genome Sequence: GT24155 - 5-prime edge 
    CCATGGAAGA GTCCGGAACA GAAGAATCGC CGTGATAACT TATTCTATCA 
    AGCCTCGAAT ATATCCCCGA TAAGTAAAAG TTTCTTACCA GTAGTATCAG 
    AAGTACATGG CTACGTTAAA GAAGCATGAC AAATTCAATA TGGCCTTTTT 
    CTGTTGATTG TACATCAATA TATTTTACAA ACCTTTGTAC TGATTCAAGA 
    AGCTGATCGG CTTTTCTT

AT5G20490.1

Model type
Protein coding
Short Description
Myosin family protein with Dil domain
Curator Summary
Encodes a member of the type XI myosin protein family involved in root hair growth, trichome development, and organelle trafficking. This gene appears to be expressed at low levels throughout the plant.
Computational Description
XIK; FUNCTIONS IN: motor activity; INVOLVED IN: in 11 processes; LOCATED IN: endomembrane system, myosin complex; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: seedling growth; CONTAINS InterPro DOMAIN/s: Dil domain (InterPro:IPR018444), Dilute (InterPro:IPR002710), Myosin, N-terminal, SH3-like (InterPro:IPR004009), Myosin head, motor domain (InterPro:IPR001609), IQ calmodulin-binding region (InterPro:IPR000048); BEST Arabidopsis thaliana protein match is: Myosin family protein with Dil domain (TAIR:AT1G54560.1); Has 40570 Blast hits to 26875 proteins in 2480 species: Archae - 466; Bacteria - 5527; Metazoa - 21427; Fungi - 3168; Plants - 2202; Viruses - 135; Other Eukaryotes - 7645 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G20490.2

Model type
Protein coding
Short Description
Myosin family protein with Dil domain
Curator Summary
Encodes a member of the type XI myosin protein family involved in root hair growth, trichome development, and organelle trafficking. This gene appears to be expressed at low levels throughout the plant.
Computational Description
XIK; FUNCTIONS IN: motor activity; INVOLVED IN: in 11 processes; LOCATED IN: myosin complex; EXPRESSED IN: stem, fruit, flower, root, leaf; EXPRESSED DURING: seedling growth; CONTAINS InterPro DOMAIN/s: Dil domain (InterPro:IPR018444), Dilute (InterPro:IPR002710), Myosin head, motor domain (InterPro:IPR001609), IQ calmodulin-binding region (InterPro:IPR000048); BEST Arabidopsis thaliana protein match is: Myosin family protein with Dil domain (TAIR:AT1G54560.1); Has 39115 Blast hits to 25959 proteins in 2421 species: Archae - 443; Bacteria - 5231; Metazoa - 20936; Fungi - 2937; Plants - 2132; Viruses - 125; Other Eukaryotes - 7311 (source: NCBI BLink).
Link
InterPro Scan - TAIR