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GT24401

CSHL Arabidopsis genetrap mutant lines

Original: GT24401

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT24401

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 643733 [Map]; Strand: c
      • AT1G02880.1 - [+] show detail - thiamin pyrophosphokinase1
        Distance: 0; Region: exon3 (CDS)
      • AT1G02880.2 - [+] show detail - thiamin pyrophosphokinase1
        Distance: 0; Region: exon5 (CDS)
      • AT1G02880.3 - [+] show detail - thiamin pyrophosphokinase1
        Distance: 0; Region: exon4 (CDS)
      • AT1G02880.4 - [+] show detail - thiamin pyrophosphokinase1
        Distance: 0; Region: exon4 (CDS)
    Flanking Genome Sequence: GT24401 - 3-prime edge 
    GGTATTTTAC CGACCGTTAC CGACCGTTTT CATCCCTAAT GAGATTCATC 
    TATAACCTTA GTTCCCTGGA GAGATTAAAG ACACACACAA AGTAGAACAA 
    TCGAAAGCAT GTTAGATCTA TCAAAGACAC CACACACATA GGTTGTGATC 
    TAATGGATAA CAATTCTAAA AATGTGATCA CAGACTAAGA GCTTACCAAG 
    TTTATATAAA AGTCGAGGAC GTCACGACGT ATAGAATCCA TATCTCCTTT 
    GATAACATCC GGCTTATACC TAAAATACAA GTTCTTCTTC ATGAAATCTT 
    TCTCTATGTA ATATACATAA AGATAAGAAG AAGGTGAATC TATGAACTCA 
    TACAAAAAAA ATATCTCCAG CTCAAATTTA GACTAATTAT TCCAATAAAC 
    CATCACTAAA TTTGAATAAT AATCTTCAAA TCCAAAAAAA GAGTAAGAGA 
    GCGAGAGATA CAGCTTCCGA AAGTTGGACC TGTTTCGAAT GGCCAAAGCG 
    TCTTCATTAG GGAAGAAGAG AGGCAATTCG TCGTAAATGC GATTAGCGCC 
    TCCATCAGCA CAAAGACAAA GTTTTGCTGC TCTACACAGA AAATTCGAAA 
    CCAATCTTAG AATAACCCCA

AT1G02880.1

Model type
Protein coding
Short Description
thiamin pyrophosphokinase1
Curator Summary
Encodes a thiamine pyrophosphokinase capable of producing thiamine pyrophosphate from free thiamine.
Computational Description
thiamin pyrophosphokinase1 (TPK1); FUNCTIONS IN: thiamin diphosphokinase activity; INVOLVED IN: thiamin metabolic process; LOCATED IN: cytosol; EXPRESSED IN: 6 plant structures; CONTAINS InterPro DOMAIN/s: Thiamin pyrophosphokinase, vitamin B1-binding domain (InterPro:IPR007373), Thiamin pyrophosphokinase (InterPro:IPR006282), Thiamin pyrophosphokinase, catalytic domain (InterPro:IPR007371); BEST Arabidopsis thaliana protein match is: thiamin pyrophosphokinase 2 (TAIR:AT2G44750.2); Has 1216 Blast hits to 1216 proteins in 497 species: Archae - 0; Bacteria - 615; Metazoa - 133; Fungi - 131; Plants - 88; Viruses - 0; Other Eukaryotes - 249 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G02880.2

Model type
Protein coding
Short Description
thiamin pyrophosphokinase1
Curator Summary
Encodes a thiamine pyrophosphokinase capable of producing thiamine pyrophosphate from free thiamine.
Computational Description
thiamin pyrophosphokinase1 (TPK1); FUNCTIONS IN: thiamin diphosphokinase activity; INVOLVED IN: thiamin metabolic process; LOCATED IN: cytosol; EXPRESSED IN: 6 plant structures; CONTAINS InterPro DOMAIN/s: Thiamin pyrophosphokinase, vitamin B1-binding domain (InterPro:IPR007373), Thiamin pyrophosphokinase, eukaryotic (InterPro:IPR016966), Thiamin pyrophosphokinase (InterPro:IPR006282), Thiamin pyrophosphokinase, catalytic domain (InterPro:IPR007371); BEST Arabidopsis thaliana protein match is: thiamin pyrophosphokinase 2 (TAIR:AT2G44750.2); Has 1306 Blast hits to 1304 proteins in 531 species: Archae - 0; Bacteria - 677; Metazoa - 135; Fungi - 134; Plants - 93; Viruses - 0; Other Eukaryotes - 267 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G02880.3

Model type
Protein coding
Short Description
thiamin pyrophosphokinase1
Curator Summary
Encodes a thiamine pyrophosphokinase capable of producing thiamine pyrophosphate from free thiamine.
Computational Description
thiamin pyrophosphokinase1 (TPK1); FUNCTIONS IN: thiamin diphosphokinase activity; INVOLVED IN: thiamin metabolic process; LOCATED IN: cytosol; EXPRESSED IN: 6 plant structures; CONTAINS InterPro DOMAIN/s: Thiamin pyrophosphokinase, vitamin B1-binding domain (InterPro:IPR007373), Thiamin pyrophosphokinase, eukaryotic (InterPro:IPR016966), Thiamin pyrophosphokinase (InterPro:IPR006282), Thiamin pyrophosphokinase, catalytic domain (InterPro:IPR007371); BEST Arabidopsis thaliana protein match is: thiamin pyrophosphokinase 2 (TAIR:AT2G44750.2); Has 1298 Blast hits to 1296 proteins in 527 species: Archae - 0; Bacteria - 670; Metazoa - 134; Fungi - 134; Plants - 93; Viruses - 0; Other Eukaryotes - 267 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G02880.4

Model type
Protein coding
Short Description
thiamin pyrophosphokinase1
Curator Summary
Encodes a thiamine pyrophosphokinase capable of producing thiamine pyrophosphate from free thiamine.
Computational Description
thiamin pyrophosphokinase1 (TPK1); FUNCTIONS IN: thiamin diphosphokinase activity; INVOLVED IN: thiamin metabolic process; LOCATED IN: cytosol; EXPRESSED IN: 6 plant structures; CONTAINS InterPro DOMAIN/s: Thiamin pyrophosphokinase, vitamin B1-binding domain (InterPro:IPR007373), Thiamin pyrophosphokinase (InterPro:IPR006282), Thiamin pyrophosphokinase, catalytic domain (InterPro:IPR007371); BEST Arabidopsis thaliana protein match is: thiamin pyrophosphokinase 2 (TAIR:AT2G44750.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR