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GT24587

CSHL Arabidopsis genetrap mutant lines

Original: GT24587

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT24587

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 2982270 [Map]; Strand: w
      • AT5G09610.1 - [+] show detail - pumilio 21
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: GT24587 - 3-prime edge 
    TTACCGACCG TTACCGACCG TTTTCATCCC TACATAGGGG TCAAAAGATA 
    ACCAATCTGC GTTGTTTGCG ACGCACTCAA AGATTAGGTC TCTGTATATG 
    CCTCTGATTT CCTGAAGCAC ATTGTTTAGG GCAAGGCATC CAGTTTCTAG 
    CCTGGCAAGG TGCAGAGTGT ATTCGTAAGT GAGCTTGTAG AGAGACTCCT 
    TCTTGGTTTT ATCGACGGCT CGTACAGCGG GGATGATCAA GCCACGACCA 
    TACTTATCGC TCATGAGCAA GAAGAAGTTT GTGTCGACGG CGCAGAATAA 
    GAGATGGTCT AAGCTAGGGC TGCGTCTAAA GAGGATACGT AAAGCTTGTG 
    AGCCGTATTG GTTCGTAGCC AAGTGGAGGA AAATGCGTTT GGTTGTGGTT 
    AACGCTGATC CGATCTTGAA CAGATGGCTC TCCCTCTCAG CCGTTGGATA 
    GGTATCGAGA TCTTGGAGGT ACTTTTGGAA CTCAGTGAAA CGTTGTGCAC 
    ACGTCATCAT GTCCAACAGA CTTGATAGCC AGTTACGATC CTTGTCGACG 
    CCAGGGCTCA CGAAACTCAG GAGGAGGAGG GAAGGGTTTG CCGGAATATC 
    TGGAGGAAGA ATCATCTGGT TGGGTCAACG ACGACGGAGT GAACGGAGGA 
    GCGTTGAAGC TAGCGGCGGA GATATGACCA ACGTTATAAA CGTTGAGATT 
    GGGGTAGTTG TTGTTGCTGG ATTCTCCAGG TTCTTGATGG TTGTAGTTGG 
    CGTAGAGTCT AAGATTGTCG AACGCAGTGA GAAGAGGAGG ATTAGGGTTT 
    GTGTTGTTTA TGTTGGTGGT T

AT5G09610.1

Model type
Protein coding
Short Description
pumilio 21
Curator Summary
Encodes a member of the Arabidopsis Pumilio (APUM) proteins containing PUF domain (eight repeats of approximately 36 amino acids each). PUF proteins regulate both mRNA stability and translation through sequence-specific binding to the 3' UTR of target mRNA transcripts.
Computational Description
pumilio 21 (PUM21); FUNCTIONS IN: RNA binding, binding; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Pumilio RNA-binding repeat (InterPro:IPR001313), Armadillo-like helical (InterPro:IPR011989), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: pumilio 16 (TAIR:AT5G59280.1); Has 4825 Blast hits to 2764 proteins in 231 species: Archae - 2; Bacteria - 5; Metazoa - 477; Fungi - 433; Plants - 446; Viruses - 4; Other Eukaryotes - 3458 (source: NCBI BLink).
Link
InterPro Scan - TAIR