GT8007

CSHL Arabidopsis genetrap mutant lines

Original: GT8007

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT8007

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 3350733 [Map]; Strand: c
      • AT3G10700.1 - [+] show detail - galacturonic acid kinase
        Distance: 0; Region: intron1 (CDS)
    Flanking Genome Sequence: GT8007 - 3-prime edge 
    ATGTGCGATT GACAATTCGC CGGGGAAATG GTTAACCGGA AAACACATCT 
    CCGTCGCTAA TTCTAACGAA AATTAACACA GTGGAGGATA TTGGCACCGA 
    GTTAACCAAC GATAACAAGC AGATTCGTTG CGTAAATGGG AAAAAAAAAT 
    GAAGAATAAC CTCAGAATCC GTAGGCCAAG ACATTGGCGC GAAGCTTTTC 
    CCAGCAGTAG ATCTATGGAT TCTTAAAGGA TTGTAGGAGT ACTGAGGTTA 
    GATGGAGAGG AAAAAGTGTG CAAAGGAAGT GCGAGTAACC TTCGAATGAG 
    GAAGATGACC AAATAAGGTG CTGCTTGGTA ACACGTCTAA TTCTATCCTT 
    TTGGTTAGTG TTTGGTAAAC CTTTAATTTC CCTTAAGTTA AAAGCCTTGA 
    TTATTT

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 3350595 [Map]; Strand: c
      • AT3G10700.1 - [+] show detail - galacturonic acid kinase
        Distance: 0; Region: intron1 (CDS)
    Flanking Genome Sequence: GT8007 - 5-prime edge 
    TTCATTATTT CTATGTGTGG AGCTCAATGT ATATGCTGCA GATTGCCGCG 
    AGTGTTTGTT TTTTGTGTTT GGATGTTTTC GAAATTTGGC TTTGGTGTTA 
    ATCCTACGAG ATCGTTCATC

AT3G10700.1

Model type
Protein coding
Short Description
galacturonic acid kinase
Curator Summary
Encodes a GHMP kinase family protein that acts as a galacturonic acid-1-phosphate kinase that catalyzes the production of galacturonic acid-1-phosphate. This is a precursor of the important cell wall building block UDP-galacturonic acid. Based on gene trap line GT8007, the gene appears to be expressed in a petal and stamen-specific manner, between flower stages 8 to 11, however, later RT-qPCR analysis demonstrates that the transcript is present throughout the plant in all tissues tested.
Computational Description
galacturonic acid kinase (GalAK); FUNCTIONS IN: ATP binding, galactokinase activity, galacturonokinase activity; INVOLVED IN: carbohydrate phosphorylation, D-galacturonate metabolic process; LOCATED IN: cytoplasm; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Galactokinase (InterPro:IPR000705), Mevalonate/galactokinase (InterPro:IPR006206), Ribosomal protein S5 domain 2-type fold (InterPro:IPR020568), GHMP kinase (InterPro:IPR006204), Ribosomal protein S5 domain 2-type fold, subgroup (InterPro:IPR014721), GHMP kinase, C-terminal (InterPro:IPR013750); Has 3493 Blast hits to 3446 proteins in 1360 species: Archae - 42; Bacteria - 2414; Metazoa - 241; Fungi - 181; Plants - 121; Viruses - 0; Other Eukaryotes - 494 (source: NCBI BLink).
Link
InterPro Scan - TAIR