K00120

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K00120

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K00120

Determination of introduced cDNA(s)

J023098B22 - Rice Full-length cDNAs - Original: J023098B22

full reading [+] show sequence

CTCTCTCTCT TCTCCTCTCT GTCGTCGCTG CATGCCGCCG GCGCCGGCGC 
CGGCGCCTCC TCCCTCTCCG TTCGGCGCTA CGACGCCATC TTCAGCTTCG 
GCGACTCCTT CGCCGACACG GGCAACAACC CCGTCGTCTT CGGCTGGTAC 
TCCGTCTTCG ACCCCGTCAC CCGCCCTCCG TACGGCTCCA CCTTCTTCGG 
CCACCCCACC GGCCGCAACT GCGACGGCCG CCTCGTCGTC GACTTCGTCG 
CCGAACGCCT GGGGGTGCCG CTCTTGCCGC CATTCTTGGC TTACAACGGG 
AGCTTCCGCC GCGGCGCAAA CTTCGCCGTT GGCGCCGCCA CCGCCCTCGA 
CTCCAGCATC TTCCACGCCG GCGATCCTCC TCCGGGCGCC AGCCCGTTCC 
CGGTCAACAC CAGCCTCGGC GTTCAGCTGG GCTGGTTCGA GTCGCTCAAG 
CCTTCGCTCT GCAGCACAAC ACAAGAATGC AAGGATTTCT TCGGGAGATC 
CCTCTTCTTC GTCGGCGAAT TCGGATTCAA CGATTACGAG TTCTTCTTCA 
GGAAGAAGAG CATGGAAGAG ATCAGATCGT TCGTCCCATA TATCATCGAA 
ACCATCTCCA TAGCCATCGA GAGGCTGATC AAGCACGGGG CGAAGAGTTT 
GGTCGTTCCA GGCATGACAC CGTCAGGTTG CACGCCGCTA ATTCTCGCCA 
TGTTTGCTGA TCAAGCTGGC CCAGATGACT ACGACCCGGT CACCGGCTGC 
CTGAAGGTGC AGAACGAGCT AGCTATTCTT CACAACTCGC TGCTGCAACA 
ATCCCTTCGG AATCTCCAGG CCAGGCACCC GGATGCCAGC ATCATCTACG 
CCGATTTCTT CAGCCCCATC ATGGAGATGG TGCAGTCACC TGGCAAGTTT 
GGGTTTGAAG ATGATGTTCT TACCATTTGT TGTGGAGGGC CTGGGACTGC 
TCTCTGTGGC AATCAGGGCG CGATCACTTG CGAGGATCCT TCTGCTCGTC 
TCTTCTGGGA CATGGTTCAC ATGACGGAGG TGGCTTACCG CTACATCGCG 
GAGGATTGGC TGCGCATCAG AGTCACCTGG GAACAAAATA ATTTGAGTGT 
TTTCAGAGTC CATAAGAAGA TATATACAGA GAGCACCAAA TTTTCAGTGT 
TAATTTGAGG TACCTCTCAG TACTTCATAA TAATCTTGAT GTCTCC

Gene models with high sequence identity

AT1G28600.1 [+] show detail - GDSL-like Lipase/Acylhydrolase superfamily protein
E-value: 1e-68; Score: 257.00

InterPro Scan Digest

Program	Description	E-value
HMMPanther	LATERAL SIGNALING TARGET PROTEIN 2	2.2e-13
HMMPanther	ZINC FINGER FYVE DOMAIN CONTAINING PROTEIN	2.2e-13
HMMPfam	Lipase, GDSL	4.5e-21

See the detailed result >

AT1G28600.1

Model type: Protein coding
Short Description: GDSL-like Lipase/Acylhydrolase superfamily protein
Computational Description: GDSL-like Lipase/Acylhydrolase superfamily protein; FUNCTIONS IN: hydrolase activity, acting on ester bonds, carboxylesterase activity; INVOLVED IN: lipid metabolic process; LOCATED IN: cell wall; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Lipase, GDSL (InterPro:IPR001087); BEST Arabidopsis thaliana protein match is: GDSL-like Lipase/Acylhydrolase superfamily protein (TAIR:AT1G28610.2); Has 3320 Blast hits to 3269 proteins in 145 species: Archae - 0; Bacteria - 177; Metazoa - 0; Fungi - 0; Plants - 3140; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).
Link: InterPro Scan - TAIR