K00350

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K00350

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Original: K00350

Determination of introduced cDNA(s)

  • J013022M19 - Rice Full-length cDNAs - Original: J013022M19

    full reading [+] show sequence

    Nucleotide sequence: J013022M19 - full reading 
    TGGCAGTCGC AGCCTCTTTC CTCCTCCGTC TCTCTCTCCC CTCTTCCTCT 
    CCTCCGCGCG GCGAACGAAG CGAGCGAGCG GCGGCCATGG AGCGGCTGCA 
    GCGGATCTTC GGGGCGTCGG GGATGGGGCA GCCGCCGACG GACTCGCCGC 
    TGCTCGACTC CTCCGAGCAG GTCTACATCT CCTCCCTCGC CCTCCTCAAG 
    ATGCTCAAGC ACGGGCGGGC CGGCGTGCCG ATGGAGGTGA TGGGGCTGAT 
    GCTCGGGGAG TTCGTCGACG ACTACACCGT CAGGGTGGTC GACGTCTTCG 
    CCATGCCGCA GAGCGGGACG GGCGTCAGCG TCGAGGCCGT CGACCACGTC 
    TTCCAGACCA ACATGCTCGA CATGCTCAAG CAGACCGGGA GACCAGAAAT 
    GGTGGTGGGC TGGTATCACT CCCATCCTGG ATTTGGATGT TGGCTTTCAG 
    GTGTTGATAT CAACACTCAG CAGAGTTTTG AAGCTTTAAA TCCCAGGGCT 
    GTTGCAGTTG TGATAGACCC AATCCAGAGT GTCAAGGGGA AGGTGGTCAT 
    TGATGCATTT CGTCTCATTA ATCCTCAGAC CATGATGCTT GGCCAGGAAC 
    CGCGACAGAC AACATCAAAT GTTGGGCATC TAAACAAACC ATCTATCCAG 
    GCTCTTATTC ACGGGCTGAA CAGACACTAC TACTCCATTG CAATCAATTA 
    CCGCAAAAAT GAACTGGAGG AGAAAATGTT GCTTAACTTA CACAAAAAGA 
    AATGGACCGA TGGATTGATT TTGAAGAGTT TTGACACTCA TTCGAAAACC 
    AATGAGCAGA CTGTTCAGGA AATGCTGAAC CTAGCCATCA AATATAACAA 
    GGCAGTGCAG GAGGAGGATG AGCTGCCACC TGAGAAACTA GCGATTGCCA 
    ATGTGGGACG GCAGGATGCC AAGAAGCACT TGGAAGAGCA TGTCTCAAAT 
    TTGATGTCGT CAAACATAGT TCAGACCCTA GGAACCATGC TCGACACGGT 
    TGTGTTCTAG TCTCCTTCTA CTGTTGTGTC AACCCTATAC AGACCCCCAC 
    CCAAATTATT ATTTATGTTT ATCGAAGCCT CTGCCGTAAT TCTGTAACTT 
    TTGGTGCCAG CTACATTTGG GTTCTAACAG TTCGACTTGA AGAATTTGTT 
    TTCTTTTAGC ACGGTGTACT GTTAATCTTC TGTTGATTTC GCTGCATTTT 
    CAAGGTTCCA TCACTTGATG

    Gene models with high sequence identity

    1. AT5G23540.1 [+] show detail - Mov34/MPN/PAD-1 family protein
      E-value: 4e-149; Score: 524.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther 26S PROTEASOME REGULATORY ATPASE SUBUNIT 5e-214
    HMMPanther EUKARYOTIC TRANSLATION INITIATION FACTOR 3 -R 5e-214
    HMMSmart Mov34/MPN/PAD-1 4e-49
    HMMPfam Mov34/MPN/PAD-1 1.3e-34
    superfamily JAB1/MPN domain 5.2e-23
    ProfileScan Post-SET domain 8.348

    See the detailed result >

    AT5G23540.1

    Model type
    Protein coding
    Short Description
    Mov34/MPN/PAD-1 family protein
    Computational Description
    Mov34/MPN/PAD-1 family protein; INVOLVED IN: response to salt stress, protein catabolic process, ubiquitin-dependent protein catabolic process; LOCATED IN: proteasome complex, nucleus, proteasome regulatory particle, lid subcomplex; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Mov34/MPN/PAD-1 (InterPro:IPR000555); BEST Arabidopsis thaliana protein match is: COP9-signalosome 5B (TAIR:AT1G71230.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR

  • J033122D05 - Rice Full-length cDNAs - Original: J033122D05

    full reading [+] show sequence

    Nucleotide sequence: J033122D05 - full reading 
    GAAAATCCAA TCCTCCTCCT CCAGATCTCT CCACCCCACC TCCGCCTCCC 
    ATGTCCGCCT CCTCGCGCTT CGATCTCCGG GCCTCGTCGC ACCCGCACCA 
    GCACGCCATC GGAGGCGGAG GCGGAGGCGG AGGCATGAGT GACGGTGGCG 
    GTGGCGCGGC GGCGGCGTTC GCGGACGCGG GGAACCTCGA GCACTGCGCC 
    AGGTACCTCA ACCAGACGCT CGTCACCTTC GGCTTCCCGG CCTCGCTCGA 
    TCTCTTCGCC ACCGACCCCG TATCGATTGC GAGAACGTGC AACTGCATCT 
    ATGCTCTTCT TCAGCAGCGG CAGCGTGATA TTGAGTTCCG GGAGTCTACC 
    AATGATCTGC GTCAGCGTAT GCAGTCTGAT ATTTCTAGAT TAGAAGCCAA 
    GATTGAAAGA ATGGATGCTC AATTAGCTGC AAAAGATCGC GAGCTGGCCA 
    CATTGACTAG AACGGAGGCC AAAAACACTG CAACTTTGAA GGCTCAGATT 
    GACAAGCTGC AACAGGAACG CGATGAGTTC CAAAAAATGG TTATTGGCAA 
    TCAGCAAGTA CGTACCCAGC AAATTCATGA AATGAAGAAA AAAGAGAAAG 
    AATACATCAA ATTGCAGGAG AAGTTAAACC AGGTATTAAT GGAGAAAAAG 
    AAGGAATCAT CACGTTCAGG AATGGAAATA ATGAACTTGT TGCAGAAAGA 
    AGGACGGCAG CGTGGAACTT GGAGTGGAAA AAAGAATGAC AATGATTATT 
    ACAAAATGAT TGTTGATGCC TATGAGGTAA AGAAGCAAGA GTTGATGCAA 
    GAAAATGCTG ATTTGCGAGC ACTATTGCGT TCGATGCAGA TGGATATGCG 
    CGAGTTCCTC AATGCTCCAA ATGGAGTTCA ACAGCCAGCT GTTGTGGGCA 
    ATGGACGACA GGAGGCAGGA TCTCCTCAGT CTCCACTTGG TGGCAAGACG 
    GATGTCTTTG ATTTGCCCTT TCACATGGCT AGAGACCAGA TTGAAGAGAG 
    TTTGCGCACT AAAATGGCTT CCATAAAGGC CCGAATGACA CAACTTCAAG 
    ATGCCCAAAA GGGTGCAGAA GTGACATCAG AAGCTACCGA GCGGGAACTT 
    GAACTTGAAG CTCAACTAGT TGAAGCTAGA AGCATTATCC AGGAGCAGGC 
    ATCCCTCATG TCCAAGCACT TTACGAAGTC TGATAAACCA AGGAGGTTGA 
    GTGGATTGGA TGCTGAGCGT GAGGCGGTTG CAGCTCAGGA GGTGTAAATT 
    ATGTTTGTGT CGACCTTCAC AGGCTTCAGC TATCCAAGGC ACGTCACGAT 
    GCCAACCTTT CATCGAGGTC TCATGTGTTT AGTAACCACC AAGCTTCCTC 
    CTTGGTAAAC CTGTTGTTGC CATGGTAGCA TGACTTCTAG GCGTTCTCTG 
    TGTAGTATTA TGTGCAGGAG CATCTCCTCC GCTGTTGCTA ACTGCCTGCC 
    TCTGACTGTT ACATGTATCG CACTTCTACT GTTAGGGAGA ACAGATCAAT 
    GTAGCTATTA TGGCCTACGA AATAGGCATC AATACCTTAC TTACAGAATT 
    GTTATTCCCT TCTTTCAAAT GTGGAGCTAG TTGTGGCTGT TGACCTCTGG 
    C

    Gene models with high sequence identity

    1. AT5G57410.3 [+] show detail - Afadin/alpha-actinin-binding protein
      E-value: 9e-148; Score: 520.00

     

    InterPro Scan Digest

    Program Description E-value
    Coil coiled-coil 0
    Coil coiled-coil 0
    Coil coiled-coil 0
    Coil coiled-coil 0
    Coil coiled-coil 0
    HMMPanther AFADIN- AND ALPHA-ACTININ-BINDING PROTEIN (AD 3.9e-63
    HMMPanther VERNALIZATION-INSENSITIVE PROTEIN 3 3.9e-63
    HMMPfam Afadin/alpha-actinin-binding 4.1e-43

    See the detailed result >

    AT5G57410.3

    Model type
    Protein coding
    Short Description
    Afadin/alpha-actinin-binding protein
    Computational Description
    Afadin/alpha-actinin-binding protein; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Afadin/alpha-actinin-binding (InterPro:IPR021622); BEST Arabidopsis thaliana protein match is: Afadin/alpha-actinin-binding protein (TAIR:AT2G18876.1).
    Link
    InterPro Scan - TAIR