K01233

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K01233

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Original: K01233

Determination of introduced cDNA(s)

  • J013049D22 - Rice Full-length cDNAs - Original: J013049D22

    full reading [+] show sequence

    Nucleotide sequence: J013049D22 - full reading 
    TGAGATAAAA AAACAGCGCC ATTGCTGATG GAACCCTTCT TACTAAGAAT 
    TGGGACACTG AGCCACTGCT TCCTTTGGTA CAAAATGTTG CAACCATTCC 
    AGAAACAAGC AGTGCAAACA ATTCAAGTCC CTCCTTGTCG ACATCTACCA 
    ATAGGAGACG CCAAAAAAGT AGGTGGGAGC CTGTTGTGGA GGAAAAGGTT 
    ACAGATAAGG TGGAACCGGT AAAAGGGTTG GTGAATGGTA CCACCCACAA 
    TAATTTGGAA GCCAAAAACA GAATGAGTAA TAACTGGGAT TCCAGAAAAT 
    TTTTCCAGTC TCATCATGCG ACTGCAAACA AAGTCAGTCA GCGGCCTGCC 
    AAGAAGCAAA AGATCAGCAG TTACTCAGAT CAAATGCAAA ATGGAAATGC 
    TTCAAGTGAT AGTGATAAGG AGCAGGATCT AACCAAATAT TATGCCAGTG 
    CAACCGCACT AGCAAATTCA CCTGAGGAGA AGAAGCGCAG GGAGCATAGG 
    TCAAAGCGTT TTGAGAAGAA CCAGAATTCA TCATCTAAAT CGAGGAATTC 
    TGCAGCAAGT AAAGATGTAA TGGCTAATAT ACATGCACGA AGAGCTGTTT 
    CAGCTCTTCT TGCCAGAAGC TGTGAAGATG GCACTACCTT GGCTGTGGAG 
    GATATGGATT GGGATGCATT GACAGTAAAG GGGACATGCC AAGAAATTGA 
    GAAACGATAT CTCCGGCTTA CATCAGCACC TGATCCTGCC ACAGTAAGAC 
    CGGAGCATGT CTTGGAGAAG GCCCTTTCCA TGGTTGAAAC ATCTCAAAAG 
    AATTATCTTT ATAAATGTGA TCAACTGAAG TCTATTCGCC AAGATCTCAC 
    AGTTCAGAGA ATCCAGAATG AACTTACTGT CAAGGTTTAT GAAACTCATG 
    CACGTTTAGC AATGCAGGCA GGTGACCTAC CTGAATATAA CCAGTGCCAG 
    TCACAACTGA AGAGGCTATA TGCAGAGGGA ATCAAGGGCT GTTACTTTGA 
    ATTCTCTGCG TACAATTTAC TCTGTGTCAT GTTGCACTCT AATAATAAAC 
    GAGACTTGCT GTCATCATTG GCAAGGTTAT CGAAACAAGC CAAACAAGAT 
    GAAGCTGTCA AGCATGCCCT TGCAGTTCAT TCTGCTGTTT CATCTGGAAA 
    CTATGTCCTA TTTTTCAAAC TATACAAGCA GGCACCGAAC TTGAATTCTT 
    GCCTCATGGA TCTATATGTG GAGCGAATGC ATGTCTAAAT CATATCGCCC 
    GACTATACCA GTGGGATATG TTGCACAAAT TTTGGGATTC TCAAGAATTG 
    ATAGTGAAGC ATCAGAAGAG TGTGAAATGT GGTTAAAAGC TCATGGTGCT 
    ATTCTTTCAA TAGACAACAG CAGAGACTTG CAATTAGACA CGAAGGCTTC 
    TACTACTACA CTTTACATGC CAGAGCCAGA GAATGCCGTC GCACATGGTG 
    ATGCCTCACT TGCAGTTAAT GACTTTTTGG CGCGGACATA GCGACAAAAA 
    TTGTAACCAT GATAGATAAG TCCAGTATGT TTGTGCCGAT CTGTGAGCCT 
    GTG

    Gene models with high sequence identity

    1. AT2G39340.1 [+] show detail - SAC3/GANP/Nin1/mts3/eIF-3 p25 family
      E-value: 2e-128; Score: 103.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther LEUKOCYTE RECEPTOR CLUSTER (LRC) MEMBER 8 2e-100
    HMMPanther 80 KDA MCM3-ASSOCIATED PROTEIN 2e-100
    HMMPfam SAC3/GANP/Nin1/mts3/eIF-3 p25 8.7e-48

    See the detailed result >

    AT2G39340.1

    Model type
    Protein coding
    Short Description
    SAC3/GANP/Nin1/mts3/eIF-3 p25 family
    Computational Description
    SAC3/GANP/Nin1/mts3/eIF-3 p25 family; CONTAINS InterPro DOMAIN/s: SAC3/GANP/Nin1/mts3/eIF-3 p25 (InterPro:IPR005062); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR