K01426

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K01426

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K01426

Determination of introduced cDNA(s)

  • J033113E15 - Rice Full-length cDNAs - Original: J033113E15

    full reading [+] show sequence

    Nucleotide sequence: J033113E15 - full reading 
    GAGGTATCCC CAAATTTCCT TCCGCCGCCG TGCTGCTGGT CACCGCCGTG 
    GCGAGGCGAG GCGATCAAGA GCTGAGCTAC CGTGGAGGCG TGGATTGAGA 
    GTCTGAGAGA GAGCAATGAC GCCGCAGCTG CAGCCGAAGC AGATGCACTG 
    GGCGAGGGCC GACTCCTCCG ACTTCGGAGG CCAAATCCCC GCCCCTCGGA 
    GCGGGCACAC GGCGGTGAGC ATCGGCAAGT CCAAGGTGGT CGTCTTCGGC 
    GGATTCGCCG ACAAGCGCTT CCTCTCCGAC ATCGCCGTCT ACGACGTTGA 
    GAATAGGATT TGGTACACAC CTGAATGCAA TGGGAGTGGC TCGGATGGAC 
    AGGCAGGCCC CAGTCCAAGG GCCTTTCACG TAGCTATCGT CATTGACTGC 
    AACATGTTCA TCTTTGGCGG CCGATCAGGC GGCAAGAGAT TAGGTGACTT 
    TTGGATGCTC GATACTGACA TATGGCAATG GTCAGAGTTA ACCGGCTTTG 
    GTGATCTACC ATCACCTCGA GAGTTTGCTG CTGCTTCAGC CATAGGAAAC 
    AGAAAAATTG TTATGTATGG CGGTTGGGAT GGCAAAAAAT GGTTGTCGGA 
    TGTATACATC ATGGACACAA TGTCACTTGA GTGGACAGAA TTATCAGTTA 
    CTGGATCAGT GCCACCTCCA AGATGCGGAC ATTCTGCCAC AATGATCGAG 
    AAGAGGTTGC TTGTATTTGG TGGCAGGGGT GGAGCTGGGC CCATAATGGG 
    TGATTTATGG GCTTTAAAGG GTGTCACTGA AGAAGATAAC GAGACACCAG 
    GTTGGACACA ATTGAAGCTC CCAGGACAAT CTCCATCTCC ACGATGTGGT 
    CACTCAGTAA CATCTGGTGG ACCTTATCTC TTGCTGTTTG GAGGACATGG 
    AACTGGTGGT TGGCTAAGTA GGTATGATGT GTACTACAAT GAATGTATTA 
    TTTTAGACAG GGTCTCTGTT CAATGGAAGC TCTTAGCAAC AAGTAATGAG 
    CCACCCCCTC CTCGAGCATA TCATTCTATG ACTTGCATAG GGTCTCGATT 
    TCTTTTATTT GGTGGCTTTG ATGGGAAAAA TACATTCGGG GATCTATGGT 
    GGCTTGTTCC TGAAGGTGAT CCTATTGCGA AACGAGACTT GGTTCCTAAT 
    GTTGATTCAG ACAGCAAACC TAGTAATGTG ACTGGTGGTG CTCAACATTC 
    CGCATCACAG GAATCACAAG CTGGGGAATC TCCAATGATT GACTTGGCAA 
    AACGATTGGG CATTTCACTT TCTTTAGAAG CTTCAGCAAG TTTTGTTGAC 
    GAGATCAATG ATAAAGAACT AATTGAATTA TCATCTATGC TTTTTGGTGA 
    ATCACCCCCT ACCGGTGACC AGCATGCATG CATTCAGGCA CTTCGTGATC 
    ATTGGACAAG TATTCCAGCC AACTCAATAC AGCTCCAGGA GCTAGGCCCT 
    TTACTGAGGG ATTATCAACG CCTCATTCTT CGCCGCTATT TGTACGGTTC 
    CCATTCTTGC GTTTTCCCTC TACTGTCTTT ATTTACACTT TCTTAACCAT 
    CTGCGTTTAT GTACATCATC CCTCTTCCAG AAAATGAATT ATTATGTTTT 
    GTCATGGTGA TAAATCCGAG ATGCTAGCAT AATTTGTTTT GTTTTGCACA 
    AGTAATAGTC ACAAGCTGTA CATTTGTACC CTTTATTGCC AATCTGTTAT 
    GCTCAGCGGT AACACATGAG CATGCATAGT AACCTGATGG CCATTATCAG 
    GCTTAGAGTT TTTACAACTC ACAAAATGAC AACGGTTCTC TTTCTATTCA 
    TCAAATCAAG TCCTGAATTT AAGTGAAGAG TATTTGTTAG AAAAATTTTT 
    AATTGATTAT GATTTTACTA GTACTTCCTT CTTGCAACGG TTACAGGGAA 
    AATTCATTCA CGTCTTTCTA TGAGAAGGAA GTTCACCGCT TCTTCCATTT 
    GAAAAATGCT TCCGAGTTAC GGATGGATGA CATCCCCATC TTGTTGATGG 
    AGTATGGAAA GCTGCTTTCC ACCTGAGGCT GGGATAGCAT CTTAGTTCTG 
    ACTCTTTACT TGAGAACATT AGAAGGCAAG GAAGCATAGC TGCATACATG 
    GCATGCTTTC ACGATCTTCA GAGCTTGGTG GCATCAGAGC TTTGCTCCCT 
    GCTCAAAAAC GTTTTCAGCA TGGGCACGAA CAAAGTTACC GCACTTTCGG 
    GTACAACGTC GATAGAATTT GTGAATCATG GGCGTGTTAA GAACCTACAT 
    GCTGCATTAT CTTAAAGAAA TCGAAAGCGA CAACACCTGG CGGCTTGGTG 
    CCGAGAAGCT GGCAGGAAGG CTCTTCACAT TTGTTCACCT TGATTGATGT 
    AGTATTCTTT CTTTGCTCAC TAACAAAAAT AATTATACAT TCATTAGTGG 
    AGTCAATTCT CATATTGATT CTTTTTCTTT GATTGATATG GAGTCGTGGC 
    CATCTCGGCG ACGGCACATT TGACATGCAT GATGCATGCG TTGTACTGGT 
    GCTGTACTCG CTCCATCAAA AAAAAAAAAA AAGACAAACC CTATGTTTTT 
    GTGGCC

    Gene models with high sequence identity

    1. AT2G36360.2 [+] show detail - Galactose oxidase/kelch repeat superfamily protein
      E-value: 0; Score: 645.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily Galactose oxidase/kelch, beta-propeller 1.1e-45
    Gene3D Kelch-type beta propeller 8.3e-36
    HMMPanther RANGAP1-INTERACTING PROTEIN-RELATED 4.4e-106
    HMMPanther KELCH REPEAT DOMAIN 4.4e-106
    HMMSmart Kelch repeat type 1 21
    HMMSmart Kelch repeat type 1 0.55
    HMMSmart Kelch repeat type 1 0.098
    HMMPfam Kelch repeat type 2 2.3e-05
    HMMPfam Kelch repeat type 2 9.6e-06
    HMMPfam Kelch repeat type 2 2.2e-06

    See the detailed result >

    AT2G36360.2

    Model type
    Protein coding
    Short Description
    Galactose oxidase/kelch repeat superfamily protein
    Computational Description
    Galactose oxidase/kelch repeat superfamily protein; CONTAINS InterPro DOMAIN/s: Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043), Kelch repeat type 1 (InterPro:IPR006652), Kelch-type beta propeller (InterPro:IPR015915); BEST Arabidopsis thaliana protein match is: Galactose oxidase/kelch repeat superfamily protein (TAIR:AT1G74150.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR