K01836

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K01836

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K01836

Determination of introduced cDNA(s)

J013042C01 - Rice Full-length cDNAs - Original: J013042C01

full reading [+] show sequence

GGATCTGGAA GGAAGGGAGA GAGAAACCGA AACGAGTCAA ACAGAAGAAA 
CAAACAGACA CGTAAGGAGG AGAAATTTCC CCTCCCTTCC CTGCTCTTTT 
CGTACTACTT GCAAGGAGGA GAAAGAAGAA CACGAGGAGG AAATCCAAGC 
CAATCGCCGC CTCCGCCTCC GATTCCTTCC GATGAAGAAG ATCTTCGGCG 
CCAAGAAGAA CCAGGAGCCC CCGCCCAGCA TCCAGGATGC CACCGATCGG 
ATCAGCAAGA GGGGCGACTC CGTGGACGAC AAGATCAAGA AGCTGGACGC 
TGAGCTCGCC CGCTACAAGG ACCAGATCAA GAAGACCAGG CCAGGCCCCG 
CCCAGGAGGC CATCAAGGCA CGCGCCATGA GGGTCCTCAA GCAGCGCAGA 
ATGTACGAAG GGCAGCGTGA CATGCTGTAC AACCAAACAT ATAACCTTGA 
CCAAGTTGCT TTTGCATCAG AGGGACTTAA AGATGCTCAG CAAACGATGA 
CTGCAATGAA GGCAGCCAAT AAAGAGCTGA AAGGAATGAT GAAAACTGTC 
AAGCTTGAAG ATATAGATAG CTTGCAAGAC GAGATGATGG ATCTTATGGA 
TGTGAGCAAT GAAATACAGG AAACTCTCGG AAGAAGCTAC AATGTCCCTG 
ATGACATTGA CGAGGAAGAA CTTATGGGGG AGCTTGATGC TTTGGAAGCC 
GACATGGACT TTGAATCAAA TTCAGTCCCC TCGTACCTTC AACCAGATAA 
GGAATCAGAT CTAGATTCTG AGCTTAACTT GCCTGCTGCA CCAACGGGTC 
ACACACCCGC CCCACCAAAC CGGCAGCAGG AGGACGAATT GGGATTGCCG 
ACAGTGCCAC AAGCATCGAT CCGTAGTTGA TTGGATTCGT TTTGTAAAAA 
CATAATGTCG TATGCAATAA CAAATTCAGT GTATCTTTGC TCATATACTA 
CTGCAATTTG TTAAGATTGG AAATAGCTTT CTCATTGTTT TGTTTAGGGT 
CTATATGTAA GAGCATTTGT TACTTTTTGA AGTACAGTGT AAATTTAATT 
GGCTGCTGGG GCATACATAT ATAAGTCCTT ATTCTGTGTT GGTGATGAGC 
TGCCCTTGCA TC

Gene models with high sequence identity

AT3G10640.1 [+] show detail - SNF7 family protein
E-value: 3e-97; Score: 352.00

InterPro Scan Digest

Program	Description	E-value
HMMPanther	SNF7 - RELATED	3.4e-24
Coil	coiled-coil	0
Coil	coiled-coil	0
Coil	coiled-coil	0
Coil	coiled-coil	0
HMMPfam	Snf7	4.7e-54

See the detailed result >

AT3G10640.1

Model type: Protein coding
Short Description: SNF7 family protein
Computational Description: VPS60.1; CONTAINS InterPro DOMAIN/s: Snf7 (InterPro:IPR005024); BEST Arabidopsis thaliana protein match is: SNF7 family protein (TAIR:AT5G04850.1); Has 1147 Blast hits to 1145 proteins in 230 species: Archae - 3; Bacteria - 8; Metazoa - 447; Fungi - 307; Plants - 230; Viruses - 0; Other Eukaryotes - 152 (source: NCBI BLink).
Link: InterPro Scan - TAIR