K01851

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K01851

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Original: K01851

Determination of introduced cDNA(s)

  • J013059I17 - Rice Full-length cDNAs - Original: J013059I17

    full reading [+] show sequence

    Nucleotide sequence: J013059I17 - full reading 
    CGAGGGCGCG ATTTTTTCGT TCCCCTCTCT ATCTCTCGCG TCCATGGCGT 
    CCTCGTCTCT CCTCGTCCGG CTCGCCTCCG ACGAGATGCC CCAAACCCTA 
    GATGCGTCGT CGTCGTCTTC GTGCTACGAC GCCTTCGTGC CGGTGTTCCA 
    CCCGGATCCG TCGTCGGGGT TCTCGGCGGC GTCGGTGGTG GCGGCCGCCG 
    ACCGCCTCCG CAGCCAGTTC CTCTCCGTGG AGCCCGACCT CTTCCACGAC 
    GCGCTCGTCG CGCCAAGCCC CGACCACCTC GGCTTCCCCG ATGAGGAGGA 
    GGAGGAGGAG ATCCGGTGGG ATTGCCTCCA ATTGGATGAC GACGACGAGG 
    AGGAGGAGGG GGTGGCGGAT CTGCGGCTTG AGGCCTCCAA CGCGGCGGAG 
    GAATTCGATT GGGAGGAGGT GGCATCGCCC TCCGGCGGCG CCGGGATGGA 
    TCAGCCGGAG CCCGAGTGGG AGGTCCTCGC CGACGTGCCG CCGCCGCCGC 
    CGCCGCCCGC CGACGAGGGC TTCGTGTACA CCTCCGACCG TGACGTGTAC 
    GAGGTGCTCG TCGGGGAGGG TTTGTTCCTG AAGAGCAAGC CGCCCGCGGC 
    GAGGTCGGCC GTCGAGGCGC TACCGTCCGC CGTCGTCGCC GCCGGCGAGG 
    ACGGCGAAGG GGAGGAGTGC GCGGTGTGCA GGGACGGCGT CGCCGCCGGG 
    GAGCGCGTGA AGAGGCTGCC CTGCTCGCAC GGTTACCACG AGGAGTGCAT 
    CATGCCGTGG CTCGACGTGC GCAACTCGTG CCCGCTCTGC CGCTTCGAGC 
    TGCCCACCGA CGACCCCCAG TACGAGAGCT GGAAGGCCTC GCGAGCTGCG 
    GCTGCCTGAA TTGCTGCGCG GTAAAAAAAA AAGGCAAGCC TTTCTTTTCT 
    TGCACAGATT TTATAGAGTT GTATGTCTTG GGTTTCAAAC TGGTACTATG 
    ATGAAAGAAC CAAACTGGTA TGATGAAAGA AAGCGTAGAG GTAGTCGCAG 
    AGATGGTTTT GCACCTTTCG ATTTGTTTAC TTTTTTTCTT AAAAGAGGGA 
    TTTGTGTTGT GACTTAAGGT TGCGAGGATA TTACATAAGT TTATCCTATA 
    TATATACTGT TGTATTTATT CTGAATTTGT AGAGTAGCTT CTGTATTACA 
    TTTTGCCCTG CAGCACAATT TTGTAAATGG ATATGGTGGT GAAAATTTCA 
    GC

    Gene models with high sequence identity

    1. AT5G64920.1 [+] show detail - COP1-interacting protein 8
      E-value: 7e-19; Score: 92.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Zinc finger, C3HC4 RING-type 7e-07
    Gene3D no description 1.5e-13
    ProfileScan Zinc finger, RING-type 12.017
    HMMPanther RING ZINC FINGER PROTEIN 1.8e-26
    superfamily RING/U-box 1e-15
    HMMSmart Zinc finger, RING-type 9.5e-08

    See the detailed result >

    AT5G64920.1

    Model type
    Protein coding
    Short Description
    COP1-interacting protein 8
    Curator Summary
    Encodes a RING-H2 protein that interacts with the RING finger domain of COP1. CIP8 exhibits a strong interaction with the E2 ubiquitin conjugating enzyme AtUBC8 through its N-terminal domain and promotes ubiquitination in an E2-dependent fashion in vitro. It is possible that the AtUBC8-CIP8 module might interact with COP1 in vivo, thereby participating in proteasome-mediated degradation of HY5.
    Computational Description
    COP1-interacting protein 8 (CIP8); CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT5G01980.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR