K01916

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K01916

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K01916

Determination of introduced cDNA(s)

  • J013168F15 - Rice Full-length cDNAs - Original: J013168F15

    full reading [+] show sequence

    Nucleotide sequence: J013168F15 - full reading 
    GGTCGAGTCG CCGGATTGGT AGCCGCCCTG CTCGTGCTGC ATTCGCTAGC 
    CACGCCGTCC GCTCAGGCCG AGGCGCATCG CGCAGGGGGA GGAGGGGAGG 
    AGAAGATGTC GAGCGACGGA GGGCCGGTGC TTGGCGGCGT CGAGCCGGTG 
    GGGAACGAGA ACGACCTCCA CCTCGTCGAC CTCGCCCGCT TCGCCGTCAC 
    CGAGCACAAC AAGAAGGCCA ATTCTCTGCT GGAGTTCGAG AAGCTTGTGA 
    GTGTGAAGCA GCAAGTTGTC GCTGGCACTT TGTACTATTT CACAATTGAG 
    GTGAAGGAAG GGGATGCCAA GAAGCTCTAT GAAGCTAAGG TCTGGGAGAA 
    ACCATGGATG GACTTCAAGG AGCTCCAGGA GTTCAAGCCT GTCGATGCCA 
    GTGCAAATGC CTAAGGCCCA TCTCGTATCC TATGTGTATC AAGTTATCAA 
    GAAGATGGGG AATAATATGG TGTGGATATA GCTATTGGAC ATGTTAATTA 
    TCCACATGAT AATATGGCTT GGATATAAGG ATCTCACACG ATAATATGGC 
    TTGGATATAT AGCTATTAAA GATTTTACCT ATGGCATATT TCAATGTGTA 
    TTAGTACTAA GTAAGAATGA TTGCAAGGTG TATTAACTAC AAATATTGCA 
    ATAAAAGTCC CTGTTACT

    Gene models with high sequence identity

    1. AT3G12490.2 [+] show detail - cystatin B
      E-value: 1e-24; Score: 110.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther CYSTATIN-RELATED 5.9e-05
    HMMPanther CYSTATIN FAMILY MEMBER 5.9e-05
    HMMSmart Proteinase inhibitor I25, cystatin 1.7e-35
    Gene3D no description 1.3e-37
    BlastProDom Proteinase inhibitor I25, cystatin, conserved region 4e-41
    PatternScan Proteinase inhibitor I25, cystatin, conserved site 0
    HMMPfam Proteinase inhibitor I25, cystatin 2.5e-21
    superfamily Cystatin/monellin 8.8e-32

    See the detailed result >

    AT3G12490.2

    Model type
    Protein coding
    Short Description
    cystatin B
    Curator Summary
    Encodes a protein with cysteine proteinase inhibitor activity. Overexpression increases tolerance to abiotic stressors (i.e.salt,osmitic, cold stress).
    Computational Description
    cystatin B (CYSB); FUNCTIONS IN: cysteine-type endopeptidase inhibitor activity, cobalt ion binding; INVOLVED IN: response to abiotic stimulus; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Proteinase inhibitor I25, cystatin, conserved site (InterPro:IPR018073), Proteinase inhibitor I25, cystatin, conserved region (InterPro:IPR020381), Proteinase inhibitor I25, cystatin (InterPro:IPR000010); BEST Arabidopsis thaliana protein match is: Cystatin/monellin family protein (TAIR:AT5G05110.1); Has 755 Blast hits to 732 proteins in 99 species: Archae - 0; Bacteria - 2; Metazoa - 28; Fungi - 0; Plants - 721; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR