K02229

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K02229

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K02229

Determination of introduced cDNA(s)

  • J023084O03 - Rice Full-length cDNAs - Original: J023084O03

    full reading [+] show sequence

    Nucleotide sequence: J023084O03 - full reading 
    GGGCCTTTCG GGACCTCAAC AGAGACGCAC CTCGGTCTCT CTCCTCCTCC 
    ACCCAAAGCT CCCACCTTTC CCTTCCTCCT CCCTCCTGCG CTCGCCTCCT 
    CGCCCAATTC CGTCCCCAAT TCGGCGCTCT CCCGCGGCGC GATCCGTCGA 
    ATCTGCCCGG ATTCGGTGTC GATTCCACGC GGCCGCCGGG GGAGCCCCCC 
    TCCCGCCGAT TTGTTTCGGA GCTTTTCTTC TTCTTCGGAT TCTTCCTTCC 
    CCAATCCTTT GGTTCTTGTT CTTTGGTCTC TCCTTCGAAA TTCGATCCCT 
    CGCCGGCAGC TTAGCCGGCG CGGCGCGGCG CGGCGGCGAT CCATCTCCCG 
    CGGTTTCGAT TTGGGTTTAT TTGGGCGGTG GGGAGAAATC CGTGGTTCGG 
    TGCGTTTGGT ATGAGCTGAA AAGGTCGTCC TTTTTTTTTT TGGGTTTTTT 
    CCCCCTGATC TGCGCGTGTT CTCTTCTCCT GGCTCGATTG CGTGTTGTAG 
    ATTTTGTGTT TTTGTTCTTG CGTTTAAATC AGGGGGGAAA ATTCCTACTC 
    TGTAAACATT TCAGCCCGAT TTTCTGTTGA TTTCCACGTT TGATTTGGTG 
    CAGGAAAAGC TAGAATTTTT ACCCTTCTTT TTTCCGAATA ATATTTCTCT 
    GATTTCTACC TGCGTAGATC TCGTTTTCCT CTTTGGTTTT GGGTCTAAGG 
    CCTGCACCGA TTCGATCAAG GAATAAAAAA AAAGCCATTG ATTTCCCATT 
    TCCGAACCTT TTATTTACCT CAACAAACTC CATTTCTTGC TGTTCCTACG 
    CCCAATTCGT CCTGATCTGG TTGTCCAAGC TTGGGATTCG CCTCCACTTC 
    CCTTGATTTG TTCGTCCGCG TTAAATCCGA TGGCGCAGGA GAGCTGTGAT 
    CTCAACAAGG ACGAGGCTGA GATCTTGAAG CCATCATCAT CATCCTCACC 
    TTCTCCTTCC CCAACCACAG CCTCCCCATC GCCACCAACA GCACAAATGA 
    CAGAACCACC GCCTCCGCAA TCGACACCAC CAACACCACC GGCAGCAGCA 
    GCAGCGGCAT CGGCAGCAGC AGCTCCTCAA TTCTCAGCCA AGAACTGCGA 
    AGGTATTCTC ATAGAGGTTT CCAAGAAGAG GAAACTAGCC GAAGCCACCG 
    CCACCGATGC TAATGCCGTG GTCGTGGCGG CGGTAGCCGA GCCATTATCT 
    CCGGTGCTGT TTGTTAACCG GTGCAACGTG TGCCGCAAGA GGGTCGGTTT 
    GACCGGATTC CGGTGCCGCT GCGGGGAGCT CTTCTGTCCT CGCCACCGGC 
    ATTCCGAGAC CCATGAGTGC TCCTTCGATT ATAAAACCGC GGGCAGGGAG 
    GAGATTGCCC GCGCGAATCC TGTGATCAGG GCTGCCAAGA TCATTAAGAT 
    CTGAGGTATA AACACTTCTG TGGTGGAGTC ATATTAAGAT CTGAGGTATA 
    AACCCATGAT CATACATCAT TATTTGTAAT TTTTTGTTAT GATTCCCTGC 
    TTGCTTAGTT CCTATAAGAT GTAAAATGCC ATACACTCAA GGTAGCATTT 
    TGTTTGGCAG ATAAGAATTG TCATTTTAAC AGTTATACAT CGTGATGTGA 
    TGCTTGTTTC CAATGTATAG TATTTCTAAA TGATATATTT CTTTAAGTTG 
    CAAATTGATT TACTTATTTG CATTCCAAAC TGTGAGATTA TTTGACTCAG 
    CTGGATTAAC TCCTGAGATT ATTTTCTTGT TGCTGGTTCC TGTCTCATCA 
    TTTGCACAAT GCTGCATTTC ATTTTTCCTA GTTCCTAGGT TGTTCTTGGC 
    ATTTGCACAT CCTTGTTTCA TGTATATATA TTTTTTCCAT TTCTCCATAG 
    TTTCTGTAGA TGTTATACAT TAATTGACCT CAACTATTTC CATTCATTGA 
    AACCTTGTAG GTTGTATGAT CTATGAACTA TATGGAAGAC TAATCCTGGA 
    GATGCTGCAA GTGAATCATG CTGTAACTAC ATGAGCTATT CAAGAGCATG 
    ATATCTGCAT GTTTGTGAAG TAATTCCCAT ACAGCCGAGG CCATAGTAGG 
    ATAGCAGTCT ACATCAAGCG AAAAATCTAT GGGTCGGCTG ATGTGGGAGA 
    AAGCTTCACT CTTGTTCATC GTCCGCCTTC GATGCACACC ATAGCTCCTT 
    CTCAAGCTAC CACGCACACG GATGATAGCA AGTGTACTGT CCAGTCATAA 
    TTTTATTGGA TCCAACAATT TATTGTAGTA TATTGTAATC TTTCTTTTTT 
    AAGTCTTGTT CGGTTTCGTT CAACACAATT GTGTGTTACT GAAAACATGT 
    GTGATGTTTG GAATTTCAGT TCAAGGTGGA GATAATCACC TCCTACCCTG 
    TTGCTATTGC

    Gene models with high sequence identity

    1. AT3G12630.1 [+] show detail - A20/AN1-like zinc finger family protein
      E-value: 6e-21; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    ProfileScan Zinc finger, AN1-type 12.16
    HMMSmart Zinc finger, AN1-type 1.2e-15
    HMMPanther PVPR3 PROTEIN 3e-46
    HMMPanther PRK1-ASSOCIATED ZINC FINGER PROTEIN 3e-46
    HMMPfam Zinc finger, AN1-type 1.2e-11
    Gene3D Zinc finger, AN1-type 2.1e-24

    See the detailed result >

    AT3G12630.1

    Model type
    Protein coding
    Short Description
    A20/AN1-like zinc finger family protein
    Computational Description
    A20/AN1-like zinc finger family protein; FUNCTIONS IN: DNA binding, zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, AN1-type (InterPro:IPR000058), Zinc finger, A20-type (InterPro:IPR002653); BEST Arabidopsis thaliana protein match is: A20/AN1-like zinc finger family protein (TAIR:AT2G36320.1); Has 1013 Blast hits to 1009 proteins in 143 species: Archae - 0; Bacteria - 0; Metazoa - 428; Fungi - 9; Plants - 446; Viruses - 6; Other Eukaryotes - 124 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR