K02409

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K02409

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K02409

Determination of introduced cDNA(s)

  • J013088A06 - Rice Full-length cDNAs - Original: J013088A06

    full reading [+] show sequence

    Nucleotide sequence: J013088A06 - full reading 
    GATTCTCATC TCTCTCTCTC TTTCACTGTT TCTTCCTCCT CTGCACTTGG 
    CGCAGCACAA AGTCGATTCC TTTCCGCCTC AGCGGCGCCG CTTGTTTCGA 
    TCGAAGCATC GCGAGAGGCA GCCCGCCGCC TGGGTTTCGT GCCGATTTTG 
    ATTTCCTTTT TCTTGGCCGC CTCTGCCTCT CTCTCTCTCT CTCTCTCTCC 
    CTTTCTTGGT TCGATTGTTC CTGGTTCTTG GCCTGATTGG TTGAACCTGC 
    TTCTTCTGGA ATCAATTAGG GGAGAAATAT TTGCAGGAGA GGGGCGGTGG 
    CGATGGCGGA GTTGGTTGGG CCGCGGGTGT ACAGCTGCTG CCATTGCCGG 
    AACCACGTCT GCCTCCACGA CGACATCATC TCCAAGGCCT TTCAGGGGAG 
    GAACGGCCGT GCGTTTCTTT TCTCTCATGC TATGAACATA TCTATGGGTC 
    CAAAGGAGGA CAGGCAGCTT ATGACAGGGC TTCACACAGT TGCTGATATC 
    TACTGCCGTG ATTGCCGTGA GGTATTGGGT TGGAAGTATG AAAGAGCATT 
    TGAAGAATCC CAGAAGTACA AGGAAGGAAA ATTCATATTT GAGAAGGCAA 
    AGATTGTTAA AGAAAATTGG TAATGACTGG AAAGGGTTGG CGTGCCAAAC 
    TTTCCTGTGA AGCTAAAATT CATACCTTTG TACATAGCTG TCGTCTGTAA 
    ATTCGAATGT TTAGCCTGCA TGATGTTGCT CATGCCATTT GTAATGTGCA 
    CTTGTTTTGC TGTTCATTTC TGTGAAGAAG ACAGGCCTCT GTTTATTTCT 
    TTGTC

    Gene models with high sequence identity

    1. AT4G27745.1 [+] show detail - Yippee family putative zinc-binding protein
      E-value: 2e-49; Score: 192.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther FAD NAD BINDING OXIDOREDUCTASES 1e-44
    HMMPfam Yippee-like protein 4.4e-46
    Coil coiled-coil 0

    See the detailed result >

    AT4G27745.1

    Model type
    Protein coding
    Short Description
    Yippee family putative zinc-binding protein
    Computational Description
    Yippee family putative zinc-binding protein; CONTAINS InterPro DOMAIN/s: Yippee-like protein (InterPro:IPR004910); BEST Arabidopsis thaliana protein match is: Yippee family putative zinc-binding protein (TAIR:AT5G53940.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR