K02904

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K02904

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K02904

Determination of introduced cDNA(s)

  • J013002A14 - Rice Full-length cDNAs - Original: J013002A14

    full reading [+] show sequence

    Nucleotide sequence: J013002A14 - full reading 
    GCCTTTCTCT TCTCCCTAGC GCCTCCTTTC CAGAAGCTTC CAAACCCTAG 
    GCGAGCGAGA GAGGCGAGAC GCCATGGACG CGGACGCGGT GGCGAAGGCG 
    TTCGTGGAGC ACTACTACCG GACGTTCGAC ACGAACCGGC CGGCGCTGGT 
    GTCGCTGTAC CAGGACGGGT CCATGCTCAC CTTCGAGGGC CAGCAGTTTC 
    TCGGCGCCGC CGCCATCGCC GGCAAGCTCG GCTCCCTCCC CTTCGCGCAG 
    TGCCACCACG ACATCAACAC CGTCGACTGC CAGCCGTCGG GGCCGCAGGG 
    CGGCATGCTC GTCTTCGTCT CCGGATCCCT CCGCACCGGC CCCGACGAGC 
    ACCCCCTCAA GTTCTCCCAG ATGTTCCAGC TGCTTCCCGC TGGAGGCAAC 
    TTCTATGTGC AGAACGACAT GTTCCGTCTG AACTATGGTT AAGGAAAGCT 
    GGATAGTCAT CCATCAACGT ACTGGGCCAG TGTTTTATGT TGAAACTATG 
    AGATGCTGTT GCTCTTTTGA TTGTTTATCG ACTGGTGCAA ATTATTGCAA 
    GAAATGGTGT TAAAAGACTA TGCACCTTCT GGATTTGTTC TTCTATGTTT 
    CTCCCATGAA CTGTGGTATG GAGGCACCAT TTATGTGGAA TGTGAATGAA 
    GACAGCCTAA AAGATTTTAT C

    Gene models with high sequence identity

    1. AT1G27310.1 [+] show detail - nuclear transport factor 2A
      E-value: 3e-45; Score: 178.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther NUCLEAR TRANSPORT FACTOR 2 3e-45
    Gene3D no description 3.4e-37
    superfamily NTF2-like 1.4e-41
    ProfileScan Nuclear transport factor 2, Eukaryote 30.554
    HMMPfam Nuclear transport factor 2 4.7e-36

    See the detailed result >

    AT1G27310.1

    Model type
    Protein coding
    Short Description
    nuclear transport factor 2A
    Curator Summary
    Encodes an ortholog of yeast NTF2, a nuclear envelop transport protein that functions as the nuclear import receptor for RanGDP, an essential player in nucleocytoplasmic transport.
    Computational Description
    nuclear transport factor 2A (NTF2A); CONTAINS InterPro DOMAIN/s: Nuclear transport factor 2 (InterPro:IPR002075), Nuclear transport factor 2, Eukaryote (InterPro:IPR018222); BEST Arabidopsis thaliana protein match is: nuclear transport factor 2B (TAIR:AT1G27970.1); Has 977 Blast hits to 977 proteins in 228 species: Archae - 0; Bacteria - 0; Metazoa - 416; Fungi - 243; Plants - 223; Viruses - 0; Other Eukaryotes - 95 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR