K03414

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K03414

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K03414

Determination of introduced cDNA(s)

  • J033030F24 - Rice Full-length cDNAs - Original: J033030F24

    full reading [+] show sequence

    Nucleotide sequence: J033030F24 - full reading 
    GAATCGCGCG GATCAACAGA CTCGAGTAGG GGAGAGAGAG AGAGAGAGAG 
    AGAGAGAGAG AGAGAGAGAG AGAGAGAAGG CGACGCGGCA ATCGATCTGC 
    CCGCCTCACC TCCGGCCACC GACCACCGCC GCCTCCGCGT CCCTCTGCCT 
    CACCTCGACG CCGGCTAGCA TCGCCGGCGA TGGGTTGCTC CTCCTCCGTG 
    CCAGCTCGAA GCACTGGAGG GTTGAACAAT ATTAGCAACG ATAACTCCGC 
    TACTGATTCA AAGGACTTGC GTGCTAAGTT GGTATTGCTT GGTGACTCTG 
    GTGTAGGGAA AAGTTGCATT GTTCTTCGCT TTGTTCGTGG TCAGTTTGAT 
    CCCACTTCCA AGGTAACTGT CGGTGCATCA TTTTTATCAC AAACATTGGC 
    TTTGGAGGAC TCAACAATAG TGAAATTTGA AATATGGGAT ACCGCTGGAC 
    AAGAGAGGTA TGCTGCCTTG GCACCTCTTT ACTACAGAGG AGCTGCTGCT 
    GCAGTTGTTG TCTACGACAT AACTAGTCCA GAATCATTTA GCAAAGCACA 
    ATACTGGGTG AAGGAACTTC AAAAACATGG TAGTCCTGAT ATTATCATGG 
    TTTTGGTTGG TAATAAAGCT GATCTACATG AAAATCGACA TGTATCTTCT 
    CAGGAAGCAC AAGAGTATGC AGAGAAGAAT AATATGGTTT TCATCGAGAC 
    ATCAGCAAAG ACAGCTGATA ATATAAACCA AGTATTTGAG GAAATTGCGA 
    AGAGGTTGCC CAGGCCAACG GCGTCTTGAT AATTAGCTTC GGTGTTTGTT 
    GAAGTGGAAC ACATACAAGC TGGTAATGTG CATGTAACAT GTCTGTCAGG 
    GCAAAAACTG CTGTATGGTC GATTGTTTGG AAAACAAAGG ATACTGTACA 
    GTTTATCCCA TTGTGTTCAA TCGTATCGTA TTGTATATGT TAATAGTGCC 
    GTCGTGTAAC ATCTTAGTTT ACTAAAACAA TCTAATATCG GTACTAAAAA 
    AAGTTGCTT

    Gene models with high sequence identity

    1. AT3G54840.1 [+] show detail - Ras-related small GTP-binding family protein
      E-value: 2e-83; Score: 306.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Ras 5.1e-59
    HMMPanther Rab5-related 3.2e-94
    HMMPanther RAS-RELATED GTPASE 3.2e-94
    HMMTigr Small GTP-binding protein 4.4e-27
    ProfileScan Small GTPase 33.614
    FPrintScan Ras GTPase 1.3e-37
    FPrintScan Ras GTPase 1.3e-37
    FPrintScan Ras GTPase 1.3e-37
    FPrintScan Ras GTPase 1.3e-37
    FPrintScan Ras GTPase 1.3e-37
    superfamily P-loop containing nucleoside triphosphate hyd 2.5e-57
    Gene3D no description 8.1e-58
    HMMSmart Ras small GTPase, Rab type 4.1e-80
    HMMSmart Ras small GTPase, Ras type 7.1e-30
    HMMSmart Small GTPase, Rho type 5.3e-13
    HMMSmart Ran GTPase 0.0044

    See the detailed result >

    AT3G54840.1

    Model type
    Protein coding
    Short Description
    Ras-related small GTP-binding family protein
    Curator Summary
    Encodes a novel Rab-like GTP-ase that is localized to the peripheral membrane of the endosome.
    Computational Description
    ARA6; FUNCTIONS IN: GTP binding, GTPase activity; INVOLVED IN: early endosome to late endosome transport, N-terminal protein myristoylation; LOCATED IN: endosome, external side of endosome membrane, early endosome; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ras GTPase (InterPro:IPR001806), Small GTP-binding protein (InterPro:IPR005225), Small GTPase (InterPro:IPR020851), Ras (InterPro:IPR013753), Ras small GTPase, Rab type (InterPro:IPR003579), Rab5-related (InterPro:IPR015599); BEST Arabidopsis thaliana protein match is: Ras-related small GTP-binding family protein (TAIR:AT4G19640.1); Has 26142 Blast hits to 26098 proteins in 715 species: Archae - 24; Bacteria - 131; Metazoa - 13692; Fungi - 3685; Plants - 2883; Viruses - 20; Other Eukaryotes - 5707 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR