K03440

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K03440

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K03440

Determination of introduced cDNA(s)

  • J023063C05 - Rice Full-length cDNAs - Original: J023063C05

    full reading [+] show sequence

    Nucleotide sequence: J023063C05 - full reading 
    GTTCGCCCGC CACGTCACCA CGCCACACCC CATTCGCTCG TTAACGGGTC 
    CGCATCAAGA TCCGCTAAGA CCCTTCTTCT TCCTCTCCTC CGGCGACAGA 
    GAGGCCACCG GCGGCGGCGG CGGGCGGAGA TGTTCCTGGT GGACTGGTTC 
    TACGGGGTGC TGGCGTCGCT GGGGCTGTGG CAGAAGGAGG CCAAGATCCT 
    CTTCCTCGGC CTCGACAACG CCGGCAAGAC CACGCTCCTC CACATGCTCA 
    AGGACGAGAG ATTGGTGCAG CATCAACCTA CGCAGTATCC GACTTCTGAA 
    GAGCTGAGCA TTGGGAAGAT CAAGTTCAAG GCGTTTGATT TAGGAGGCCA 
    TCAAATTGCT CGCCGTGTGT GGAAAGACTA CTATGCTAAG GTCGACGCGG 
    TGGTCTACCT CGTGGATGCC TACGACAAGG AGAGGTTCTC CGAGTCGAAG 
    AAGGAGCTCG ACGCCCTCCT CTCGGACGAC TCCCTGGCCA CCGTCCCCTT 
    CCTGATCCTG GGCAACAAGA TCGACATCCC CTACGCCGCG TCGGAGGAGG 
    AGCTCCGCTA CCACATGGGG CTGAGCAACT TCACCACCGG CAAGGGCAGG 
    GTGAGCCTCG GCGAGTCCAA CGTTCGCCCC CTGGAGGTGT TCATGTGCAG 
    CATCGTCCGC AAGATGGGCT ATGGGGATGG GTTCAAGTGG GTGTCACGGT 
    ACATCAAGTA GGGTGTTGTT AGTTTTTGCT GGAAAAATGT TGAGGTAGTC 
    TTCATAGTTC ATACTCCTGT TTCACCTTAC CACAGAGATG ATTTTAGGAG 
    GGAGCTAGAG CTATAGCTAG CAATCTGGTC ATGGTGGTTC ATGGTTCTTC 
    CGGTACATAT GTGGTGGAAG CAGCGAAAGA CTGGGATTTG TGCTAGATTT 
    TTCTTCAGTT AATTAAAAAG TGTGACTTTT AAAG

    Gene models with high sequence identity

    1. AT4G02080.1 [+] show detail - secretion-associated RAS super family 2
      E-value: 4e-83; Score: 305.00

     

    InterPro Scan Digest

    Program Description E-value
    FPrintScan ARF/SAR superfamily 3.4e-74
    FPrintScan ARF/SAR superfamily 3.4e-74
    FPrintScan ARF/SAR superfamily 3.4e-74
    FPrintScan ARF/SAR superfamily 3.4e-74
    FPrintScan ARF/SAR superfamily 3.4e-74
    HMMTigr Small GTP-binding protein 6.2e-10
    superfamily P-loop containing nucleoside triphosphate hyd 1.8e-40
    ProfileScan Small GTPase SAR1-type 29.5
    HMMPfam ARF/SAR superfamily 2.5e-64
    HMMPanther Small GTPase SAR1-type 1.8e-126
    HMMPanther ARF/SAR superfamily 1.8e-126
    Gene3D no description 9.2e-55
    HMMSmart ADP-ribosylation factor 1.9e-16
    HMMSmart Small GTPase SAR1-type 1.2e-129

    See the detailed result >

    AT4G02080.1

    Model type
    Protein coding
    Short Description
    secretion-associated RAS super family 2
    Curator Summary
    A member of ARF-like GTPase family. A thaliana has 21 members, in two subfamilies, ARF and ARF-like (ARL) GTPases.
    Computational Description
    secretion-associated RAS super family 2 (SAR2); FUNCTIONS IN: GTP binding; INVOLVED IN: intracellular protein transport; LOCATED IN: plasma membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Small GTP-binding protein (InterPro:IPR005225), Small GTPase SAR1-type (InterPro:IPR006687), ARF/SAR superfamily (InterPro:IPR006689); BEST Arabidopsis thaliana protein match is: Ras-related small GTP-binding family protein (TAIR:AT3G62560.1); Has 6784 Blast hits to 6782 proteins in 374 species: Archae - 2; Bacteria - 40; Metazoa - 3245; Fungi - 1245; Plants - 1081; Viruses - 0; Other Eukaryotes - 1171 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR