K03648

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K03648

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K03648

Determination of introduced cDNA(s)

  • J023131K04 - Rice Full-length cDNAs - Original: J023131K04

    full reading [+] show sequence

    Nucleotide sequence: J023131K04 - full reading
    TGATGTGATG TGATTAGTTG ACGAGACGGG GAGGGGCGTC CAGCCAAAGA 
    GGATCGAATC GCCATCAGCC ACCGCCGCCG CCGCCGGAGA CCTCCGATCC
    GCCGCCTCCA ATCGCCGACG ATGGAACCGC TCAATCATCC AAGGTGACGC
    ATCGGCATCG CCTCTTCCAA TCCCCCTATT CATCCATCCA CTAAATTCGT
    CATCATCGCC ATGGCCACCA CCAAATCCTT TCTCCCTCCC CCATTCATCG
    CCCTCTCTTC GAACCCTCGT CCCACCACCC TCGCTCCCAC TCCCAATCCC
    AGGCCCCGCC GCCGCAATTC CCTCGCTATC TGCTCCGCCT CCGCCTCGGG
    CGACCCTTCT CCCACACCCG AGGCCGAGGG CGGCGGCAAC CCGCTCCTCG
    CGCTATGGCG CCGCACGCTC CACCCCCTGG GTGACTACGG CTTCGGCAAG
    CGCAGCGTCT GGGAGGGCGG CGTCGGCCTC TTCATGGTCT CCGGGGCCGC
    GCTGCTCGCC CTCGCCCTCG CCTGGCTCCG GGGATTCCAG CTCCGCGCCC
    GCTTCCGCAA GTACCAAGCC GTCTTCGAGT TCACCCAGGC CTGCGGGATT
    TGCGTCGGCA CCCCCGTCCG CATCCGCGGT GTCACCGTCG GCAACGTCGT
    CCGCGTCGAC TCTTCCCTCA AGAGCATCGA TGCTTATGTT GAGGTTGAAG
    ATGATAAAAT TATTGTGCCC CGCAATTCAG TGGTTGAGGT GAATCAGTCT
    GGTCTTCTAA TGGAGACACT GATTGATATA ACACCAAAAG ATCCACTCCC
    TACACCTTCA GTTGGTCCTC TTGACCCAGA CTGTTCCAAA GAAGGTTTAA
    TTCTCTGTGA CAAAGAGAGG ATGAAAGGAC AACAAGGAGT AAGCTTAGAC
    GCACTGGTTG GAATATTTAC TCGTCTAGGA AGAGATATGG AGGAAATTGG
    TGTTCACAAA AGCTACAAGT TGGCTGAAAA AGTAGCATCA ATAATGGAAG
    AAGCGCAGCC TCTTCTTTCA CGGATTGAAG CATTAGCTGA AGAAATTCAA
    CCTCTGCTTT CTGAGGTTCG TGATAGTGAT CTGGTGAAGG ATGTCGAGAT
    TATAGCTAAA GGTCTGGCTG ATGCATCCGG TGATTTAAGA AGGCTGAAGT
    CTTCCATGCT TACCCCTGAG AACACCGATC TTATTAAGCA GTCTATTTTC
    ACCCTTATCT TTACTCTGAA GAATATTGAG AGTATCAGCT CAGACATCTC
    TGGTTTCACC GGTGACGACG CGACAAGGCG GAACATCAAG CTGCTTATCA
    AGTCACTTAG CAGACTGTTG TGATTGCTCA GGAATAACAC GGGGGAGCTT
    TCTCCATTGG GAAGCGCTGA TACAGGAATT TGCTATTAGT GTAGCATTTC
    TTGAAAAAAG GAAGAAAATG AGAGGAAAGC GCAGGTTGAG AATGAGATTA
    GAAAGAGGTC ATTTGGAGAG AGGGGAACCA AGTTTTTGAA TAGTGGAATT
    ATAGTCTCTG GTTTTGTTTT CCAAGTTTCC TGCATTCCCG GATATTATTA
    AAACAAGAAA AGCACGGGGA AATGTGTAAA TCTCCGTTAG TTGTGTAGGG
    CATCTTCTTA ATTTGTTTTT GTTTTTTTTT TTGGGAGGCA GTGTAGGCCG
    GTTTTTGTTT GATATTGTGA TGTTTCATTC TTGTGCCCTT GCGCAAAGGT
    AACCAGCAAG GAATGCATAA ATACATGAAA ACTTTGTTGT CTGAGTG

    Gene models with high sequence identity

    1. AT3G20320.1 [+] show detail - trigalactosyldiacylglycerol2
      E-value: 2e-117; Score: 420.00

     

    InterPro Scan Digest

    See the detailed result >

    AT3G20320.1

    Model type
    Protein coding
    Short Description
    trigalactosyldiacylglycerol2
    Curator Summary
    Encodes a permease-like component of an ABC transporter involved in lipid transfer from ER to chloroplast. A phosphatidic acid-binding protein with a predicted mycobacterial cell entry domain. It is tethered to the inner chloroplast envelope membrane facing the outer envelope membrane. Presumed bacterial orthologs of TGD1 and TGD2 in Gram-negative bacteria are typically organized in transcriptional units, suggesting their involvement in a common biological process. Mutations in this gene suppress the low temperature-induced phenotype of Arabidopsis tocopherol-deficient mutant vte2.
    Computational Description
    trigalactosyldiacylglycerol2 (TGD2); FUNCTIONS IN: phospholipid binding, lipid transporter activity; INVOLVED IN: lipid transport; LOCATED IN: chloroplast, chloroplast inner membrane, membrane, chloroplast envelope; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Mammalian cell entry related (InterPro:IPR003399); Has 660 Blast hits to 610 proteins in 215 species: Archae - 0; Bacteria - 436; Metazoa - 0; Fungi - 2; Plants - 56; Viruses - 0; Other Eukaryotes - 166 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR