K04111

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K04111

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K04111

Determination of introduced cDNA(s)

  • J023051F22 - Rice Full-length cDNAs - Original: J023051F22

    full reading [+] show sequence

    Nucleotide sequence: J023051F22 - full reading 
    GGTCCCCTTC GTCGCCGCCG CAATCACACG CACACCCTTT ACCCGCCGGA 
    ACGCGCGCAC TTGCCTTGCC CCCCCGCCAA ACGCCAGCGA CAACAGCTAT 
    AGCAGCAGCC GCGAGCCGCG AGGCCTTCTC CTCCCGGGAC GCCGCGCGAA 
    TGCCCTCCCC TCGCTGCCGG GGGGAAGAGG AGCGGTGGCA GCAGGCGAGG 
    GCGCCGCGGC GGCGGCGGGG ATGGCGGGGC GGCCGGGGTA CGTGACGGTG 
    CCGATACTGT CCGTGCTCGC CGCGATCGGG TACGTGTACT ACACGGCGGT 
    GTTCCTGGCG ATCCCGGCGT GGCTGGGGCT CGCCACGGCG GCCGGGGTGG 
    CCAACGCGGT GGCCTTCACC GCGCTGGCCG CCGCCTGCGT CGCGACCTAC 
    GCCGTCGCCG TCTCCCGCGA CCCGGGCCGC GTGCCGCCGG CCTTCTTGCC 
    CGACGTCGAG GACGCCGAGA GCCCCATCCA CGAGATCAAG CGCAAGGGTG 
    GCGATTTGAG ATGTTGTCAG AAATGTTCCC ATTATAAGCC TCCCCGTGCT 
    CATCATTGTC GTCTGCAAGA GATGTGTTCT AAGAATGGAC CATCACTGTA 
    TATGGATTAA CAATTGTGTT GGACATGAAA ACTACAAGAT TTTCCTAGTC 
    TTTGTGCTGT ATGCTGTAGT AGCAAGCTTA TATTCACTGG AGGTGCTGTG 
    CACAGTTTGC CTAAGAATGA ACAATTAGGC AGTGATTCTT CTAGAACATC 
    AATTATCATT TGCGGGGTAT TTTTGTGTCC ACTAGCTTTG GCATTGTCCA 
    TTCTTTTGGG TTGGCATGTG TATCTCATCT TTCATAATAA AACTACTATT 
    GAGTACCATG AAGGAGTTAG GGCAATGTGG TTGGCAGAAA AGGCTGGAAA 
    TCTATACCAC CATCCCTATG ACCTTGGTGT CTATGAGAAT CTTGTTTCAG 
    TGCTAGGGCC TAATGCGTTG TGCTGGCTCT GCCCAATATC AAGGAATACA 
    GGCAATGGTA TTCGTTTCCG TACATCATAT GATATACCAC TATCTACACC 
    ACCAATTTGA CATCAGGTAG CATTACATTC ATGTTAGATT TCTGGTAATT 
    TGCTAAAAAA ACTTGGTTGC CTATCCAAGT GTGAAATGTG CTATTCTCGC 
    AATAGCATTT GATAACCCTT CATAAAGGAA TAGCGTTTGT CAATGTCTTG 
    AAACTCTTGC ATCAAGAGTT TGTACTTGAT GTGATCAAAT GTGTAAATGA 
    CACTCCACGT GTAAGATACA GGAAGAGGAG CTGGATATTC CTCCAGGCTC 
    TAAGGATCTA TATGGATTTT GGAGCTAGAA ATGTTAACTT GGTTTTCTTT 
    TTGCTTTGCA ATTTTCGACA TACTTGATGA GAAGAGTCGC CAGCGCCTCT 
    ACCGATCTAG AGTGGTTGTA TTCATACACA GAAGTCCAAA TACATGAGTG 
    CCTCTTGTAA AGTTC

    Gene models with high sequence identity

    1. AT3G09320.1 [+] show detail - DHHC-type zinc finger family protein
      E-value: 1e-61; Score: 234.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Zinc finger, DHHC-type 6.3e-18
    ProfileScan Zinc finger, DHHC-type 9.668
    ProfileScan Zinc finger, DHHC-type 19.089
    HMMPanther ZINC FINGER DHHC DOMAIN CONTAINING PROTEIN 3.5e-09
    HMMPanther ZINC FINGER DHHC DOMAIN CONTAINING PROTEIN 5.3e-14
    HMMPanther ZINC FINGER DHHC DOMAIN CONTAINING PROTEIN 1.2e-05

    See the detailed result >

    AT3G09320.1

    Model type
    Protein coding
    Short Description
    DHHC-type zinc finger family protein
    Computational Description
    DHHC-type zinc finger family protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, DHHC-type (InterPro:IPR001594); BEST Arabidopsis thaliana protein match is: DHHC-type zinc finger family protein (TAIR:AT5G04270.1); Has 5137 Blast hits to 5129 proteins in 251 species: Archae - 0; Bacteria - 0; Metazoa - 2212; Fungi - 755; Plants - 839; Viruses - 0; Other Eukaryotes - 1331 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR