K04221

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K04221

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K04221

Determination of introduced cDNA(s)

  • J033127N02 - Rice Full-length cDNAs - Original: J033127N02

    full reading [+] show sequence

    Nucleotide sequence: J033127N02 - full reading 
    GACCGTGCGC TGCTTCGGTT TGCTCGGGCG GAGAAAGGAA GGGCAGCGTC 
    GCGGTTGCTT GCTTCCTCCC GAATCCTCGC CTCGATCTCG CTCGCGGGCG 
    GGCGGAGGGA TCGTGATCGG GATCGGGATC GGGGGCGCGC GAAGATGAGC 
    GTGATCGACA TCCTCACGCG GGTGGACTCC ATCTGCAAGA AGTACGACAA 
    GTACGACGTC GAGAGGCTCA ACGGCGCCAA CGTCGCCGGC GAGGACCCCT 
    TCGCCCGCCT CTACGGCTCC ATCGACGCCG ACATCAACGA ATGCGTCGAG 
    AAAGCGGAGG CGGCGAAGCA GGAGAAGAAC CGCGCCACGG TGGTCGCGCT 
    CAACGCGGAG ATCCGGCGAA CCAAGGCCAA GCTCGTCGAG GAGGACCTGC 
    CCAAGCTGCA GCGCCTCGCG CTGAAGAAGG TCAAAGGGCT CACAAAAGAG 
    GAACTCGCGA CCCGTAGTGA TCTGGTTGCT GCCTTACCCG ATAGAATACA 
    ATCAATACCA GATGGTAGTT CAAGTGCAAA GAAAAATGGG ACTTGGGGCG 
    CCTCAGGATC CCGTACTGGT GGAGCCATTA AGTTTGACAC TTCTGATGGC 
    AACTTTGATG ATGAGTACTT TAAGGGAACA GAAGAATCAA ATCAGTTTCG 
    TCGGGAATAT GAGATGCGCA AAATGAAACA GGATGAAGGT TTGGATATTA 
    TCGGTGAAGG GCTGGAAACT CTGAAAAACA TGGCATCTGA TATGAATGAG 
    GAACTGGATA GGCAAGTTCC CTTGATGGAT GAAATGGACG AGAAGGTGGA 
    TAGAGCCAAC ACAGATTTGA AGAATACCAA CGTCAGACTA AAAGAGACCG 
    TTCTTCAGCT GAGATCTAGT CGCAACTTCT GCATTGATAT CGTCCTGCTC 
    TGTGTTATTC TTGGTATTGC GGCTTATCTT TACAATGTTC TAAAAAAAGT 
    GAGACCGGAC TGTGCCATGG ATCTATTTTC CACGTCTTCC GGTGATGGAT 
    GGATGAGTTT CGACGTGTCC ACGAGCTGTT CCCTTTATTT TTATCTCATC 
    TGTGTAATAG TAGTATGGTG TTCTTCCGGG ACTTGCGAAC ATCCTTGTTG 
    AAAGTTGAAA CAGTGAGCAT TGTGCGTGCG AAAACCTGAC GTCTTCTGTA 
    CATCTGCGAG TTTAATTCTT AGCAAGAGCG TATCAAACAT TCTGTTATGA 
    ACTATGTAAA CCTTCTCATG TATATTCATT GCATCAGTTC TTTGGTTGTG 
    CC

    Gene models with high sequence identity

    1. AT3G09740.1 [+] show detail - syntaxin of plants 71
      E-value: 2e-101; Score: 366.00

     

    InterPro Scan Digest

    Program Description E-value
    PatternScan Syntaxin/epimorphin, conserved site 0
    Coil coiled-coil 0
    HMMPfam Target SNARE coiled-coil domain 5.4e-13
    ProfileScan Target SNARE coiled-coil domain 14.274
    HMMPanther SYNTAXIN 2.3e-15
    HMMSmart Target SNARE coiled-coil domain 8.4e-07
    Gene3D no description 6.9e-07

    See the detailed result >

    AT3G09740.1

    Model type
    Protein coding
    Short Description
    syntaxin of plants 71
    Curator Summary
    syntaxin of plants 71 (SYP71)
    Computational Description
    syntaxin of plants 71 (SYP71); FUNCTIONS IN: protein transporter activity; INVOLVED IN: intracellular protein transport, protein targeting to membrane; LOCATED IN: integral to membrane, endoplasmic reticulum, plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Target SNARE coiled-coil domain (InterPro:IPR000727), Syntaxin/epimorphin, conserved site (InterPro:IPR006012); BEST Arabidopsis thaliana protein match is: syntaxin of plants 72 (TAIR:AT3G45280.1); Has 541 Blast hits to 539 proteins in 136 species: Archae - 0; Bacteria - 0; Metazoa - 132; Fungi - 116; Plants - 188; Viruses - 0; Other Eukaryotes - 105 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR