K04419

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K04419

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K04419

Determination of introduced cDNA(s)

  • J013160K11 - Rice Full-length cDNAs - Original: J013160K11

    full reading [+] show sequence

    Nucleotide sequence: J013160K11 - full reading 
    GAACACCCAA CCCCCTCTCT CTCTCTATCT CTCTCCTCTC TCTCTCTCTA 
    GCTCTAGCTC TAGCTCGTCG CCGCCATGAA CGTTCCAAGC AAATGCATGG 
    CTCCTGCAAA GTAAAAAAAG AAGAAGAAGC AGCAGCTGCA GCTTCTCTTC 
    AGTATCGATC TTTAACTGTA TCGAGCTAGC TTAGCTTAGC TTAGCTCTCT 
    GCCATTAACT TGTGCTTCAC TGAGCTTGAG CTAGCTAGCT TCTTGGCTGT 
    GTGACTGAGT AGCTCTAGCT CCTCGTCGTC GTCGTCGTCG TCGTCGTCGT 
    CGGCGTCGGT GGTGGTGTGA ATTGATAGAA TTGATACGAT GGAGAGGGCG 
    GCTGCGGCGG CGCCGGTGGT GGTGAGGCAT GGAGGAGTGG TGTTGCCGCC 
    GGGGTTCAGG TTCCACCCGA CGGACGAGGA GCTCGTGGTG CAGTACCTCC 
    GCCGCAAGGC GTTCGGCCTG CCGCTCCCCG CCGCCGTCAT CCCCGACCTC 
    CACAACCTCT TCAAGCTCGA TCCCTGGGAC ATTCCTGGTG CGAGCAGCGA 
    CGGGGACAAG TACTTCTTCG CCGTGCGGCC ACCTGCGGCG AGGGGGAGGA 
    GGCAGCATGT GACGGCGAGC GGTGGGTGCT GGAAGCCGGC GGGCGGGCGG 
    GACAAGCCGG TGGTGGTGGC CCGGTGCGGC GGGAGCCACC TCGTCGGCGT 
    CAAGAAGGGC ATGGTGTTCG TCCCACGGCA AGGGAGGAAG GCACCGGCGG 
    CGGCGGCGGC GGCCGCCGGC GGTGGCTGCT GGGTCATGCA CGAGTACAGC 
    CTCGCCCTGC CGATGCACAA GAAGGGTTGC TTGGCTGAGG CTGAAGAATG 
    GGTAGTGTGC CGGATATTTC AGAGGAGCAG CAGCGGCAGC CGGTCGCCGA 
    GGAGGCCTGA CAACGACGTG AGGCGAACGA TGCCGGCCGT CGCCGAGCTC 
    GGCCGGTCGC CGTCGCCATC GTCGTCGTCG TCGCAATCCA GCTGCGTCAC 
    AAGCAGCTCC GACCAGGAAG AGGTCAGCAG CGGCTAGCTA GCTGAAGAAG 
    AATGCAGGCA GCAGCAGCAA GCAGCTAAGC TGCCTCTCAA AGAGAGGCTT 
    GAGTGTTAGC CTAGCTAAGC ATATATATTT ATAGCCGGCC AAACCCTCTG 
    AAAGTGATCT GCATCAATGC ATGCCCCCCT TTAATTTCTT CTTCCTCCTT 
    AATTATTTTT TCCCAACCAT GTAATGTAAT GTAATTTAAT GTAATGCAGT 
    GTAATGTAAC GGGAAGGAAG CACTGAATTA ATCAAATTAA ATTAACAAAT 
    GAAGAGTGCT CAAAAGTCCA AGGAAGCTTC TAAGGTTCAG GAGCCAGATA 
    TTATCTACTT AATTAATTAA TTATGGGCAC ATATCTGTAG TTGCTAGCTA 
    GCTGCATATG CATCTCGTCG TTGTCGATCC ATTTGTAACT TGCAAGTTGT 
    GTTGGTGTAA TATTGTAATA TTTTTCTCCG ATGGTTGAGA AATTAATCTG 
    AAATCCATTA TAGCAATTAA TTGC

    Gene models with high sequence identity

    1. AT1G52880.1 [+] show detail - NAC (No Apical Meristem) domain transcriptional regulator superfamily protein
      E-value: 5e-27; Score: 119.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily No apical meristem (NAM) protein 1.1e-41
    ProfileScan No apical meristem (NAM) protein 40.176
    HMMPfam No apical meristem (NAM) protein 3e-27

    See the detailed result >

    AT1G52880.1

    Model type
    Protein coding
    Short Description
    NAC (No Apical Meristem) domain transcriptional regulator superfamily protein
    Curator Summary
    Transcription factor with a NAC domain. Homologous to the petunia gene NAM which is required for the development of the shoot. Expressed in the embryo.
    Computational Description
    NO APICAL MERISTEM (NAM); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: multicellular organismal development, regulation of transcription; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: No apical meristem (NAM) protein (InterPro:IPR003441); BEST Arabidopsis thaliana protein match is: NAC domain containing protein 2 (TAIR:AT3G15510.1); Has 3040 Blast hits to 3032 proteins in 79 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 3034; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR