K05210

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K05210

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K05210

Determination of introduced cDNA(s)

  • J033128D10 - Rice Full-length cDNAs - Original: J033128D10

    full reading [+] show sequence

    Nucleotide sequence: J033128D10 - full reading 
    AAAAAGAAAT TCGTCTCCTC CGCTCCTAGC GCCGCCGAGT CGCGGCTGAA 
    CAGAACAAGG GAGGGAGGGG CGGCGATCTC CATCTGGCGA GCAGAGCAGG 
    GGAGGGGATC CTCATCTGGA AGAGGCTCTT CTTTTTAATT TCAGAGCCTT 
    AACCTTAATA CAAGTAACAG TTTGTTTGTT CCCCGATCCG CCCCTGCTGC 
    TGGTACTTGG GCTATTTGAT TCCTGCATAG TTTCAGAGCT AGAGCTAGTG 
    TTGCTCTTTA CAGCTTTGGG CGGATTCGCG ATGGCGGATG AAGAGTCGTC 
    TGACTTCACC TTTTGCAAGA TCGATTTTGA GGGAGATGGT GGTCTGGAGT 
    TCCCTAAAGC TATCCCTGTG GCAAGTACAC CTGGTGATGC TGGTGCAGAT 
    AACTTAAAGA CTAAGAAGAT CGAAGGCAAC ATGCAGGCAA ACAATTCAAT 
    TAAAGATCAA ACATCTAATT CTATATCTAG TAGCATCAAT CGTGTATCAC 
    TCGAAGACTC TAATGGAAAA GAGTCAGTTC TTAGCAGAGA GAATACACAG 
    TCAAATTTAT CATCTCAACG AAAATCTTCA AAGAAACCTG CAGCGCGTGC 
    AAAAGTTCCT TTCGAGAAGG GCTATAGCCA AATGGATTGG CTTAAGCTGA 
    CCCGTACACA TCCTGATCTT GCAGGGCTCA AGGGGCAGTT AAACCGAAGG 
    TTGATTTCTC TAGAAGAAGT TAAACAGCAT AAAACAGGAG ATAGTATTTG 
    GACTGTTTTG AAAGGTCGTG TGTACAACAT TGCTCCGTAC ATGAAATTTC 
    ATCCGGGAGG AGTTGATATG CTTATGAAGG CTGCTGGAAA AGACTCGACC 
    GCTCTGTTCA ACAAATATCA TGCATGGGTA AATTTTGAAT TCCTCCTGGA 
    GAAGTGCCTT GTTGGATTCC TCGATCCCAA TGAGTAGATG CGCCATTGAG 
    CCTGAGGCCA GAACTCCACT TCCTCTTTCT TGTCCGCGAC ACTAGTCCCT 
    GATGCGTATC CATCACATGG AGACAGTTTA AGGAATGTAA ACAAGTGTTT 
    TGCTTCATTG CTAAGGAGAT ATAGATGCTG CTTAACATTT TAGAAAAAAA 
    AGAAAAGTTA GAAACTTGAT CACCATTGTT ATGTACAAAT TCCTTCACCA 
    TTGATTGCTG AAGAAAACAA AGAACATTTC CATCC

    Gene models with high sequence identity

    1. AT5G09680.2 [+] show detail - reduced lateral root formation
      E-value: 3e-50; Score: 196.00

     

    InterPro Scan Digest

    Program Description E-value
    ProfileScan Cytochrome b5 21.594
    HMMPanther FLAVOHEMOPROTEIN B5/B5R 8.3e-35
    HMMPanther NADH-CYTOCHROME B5 REDUCTASE 8.3e-35
    Gene3D Cytochrome b5 6.1e-23
    superfamily Cytochrome b5 2.4e-28
    PatternScan Cytochrome b5, heme-binding site 0
    HMMPfam Cytochrome b5 3.3e-22

    See the detailed result >

    AT5G09680.2

    Model type
    Protein coding
    Short Description
    reduced lateral root formation
    Curator Summary
    Encodes RLF (Reduced Lateral root Formation). Involved in lateral root formation. Contains a cytochrome b5-like heme/steroid binding domain. Localized in the cytosol.
    Computational Description
    reduced lateral root formation (RLF); FUNCTIONS IN: heme binding; INVOLVED IN: lateral root formation; LOCATED IN: cytosol; EXPRESSED IN: stem, root, flower, leaf; CONTAINS InterPro DOMAIN/s: Cytochrome b5, heme-binding site (InterPro:IPR018506), Cytochrome b5 (InterPro:IPR001199); BEST Arabidopsis thaliana protein match is: cytochrome B5 isoform A (TAIR:AT1G26340.1); Has 3049 Blast hits to 3033 proteins in 420 species: Archae - 2; Bacteria - 7; Metazoa - 694; Fungi - 1150; Plants - 759; Viruses - 0; Other Eukaryotes - 437 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR