K05313

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K05313

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K05313

Determination of introduced cDNA(s)

J023058O06 - Rice Full-length cDNAs - Original: J023058O06

full reading [+] show sequence

GAGAAGGACC TGCAGCGCAA GGAGTCCGTC GAGTGGGTCA ACATGGTGCT 
CGGCAAGCTC TGGAAGGTCT ACCGCCCTGG CATCGAGAAC TGGATCGTCG 
GCTTGCTCCA GCCCGTCATC GACAACCTCC ACAAGCCCGA TTACGTCAAC 
CGCGTCGAGA TCAGGCAGTT CTACCTCGGC GAGGAGCCCC TCTCCGTTAG 
GAACGTCGAG CGCCGCACCT CACGCCGGGC CAACGACCTC CAGTACCAAA 
TTGGCCTCCG TTATACTGGT GGTGCACGCA TGGCATTGGC CCTCTCCTTA 
AAGTTTAGTG CCGTACCTGT CGTTGTGCCA GTCTGGGTTC GAGATTTCGA 
TATCGATGGG GAATTGTGGG TTAAACTAAG GCTTATACCG ACAGAACCTT 
GGGTGGGAGC TGTATCTTGG GCATTTGTAT CGCTCCCAAA GATTAAATTT 
GAGCTGTCTC TGTTCCGGCT TTTCAATCTT ATGGCAATTC CTGTTCTGTC 
AATGTTTCTC ACGAAACTTC TAACAGAAGA TTTGCCACGT CTCTTTGTGC 
GGCCCAAGAA GATTGTCCTT GATTTTCAGC AGGGAAGATC TATGGGACCT 
GTTGCAGGAG ATGTTGCAAG TGACGTAATC CAAAATGTTG CAAGTGGCAT 
ACTTCAAGAT GTTGCAAGTG ATGTAATTCA AGATGGGAAT AAGGACTTCG 
TTGGAGAACT ATCAGTGACA TTAGTTGATG CCAGGAAGCT TAGCTTTGTC 
TTATTCGGGA AGACTGATCC ATATGTTGTC ATGATTCTTG GTGATCAAGA 
AATAAAGAGC AAGAAGAATA GTCAAACAAC TGTAATTGGG CAACCAGGCG 
AACCAATCTG GAATCAAGAC TTTCATATGC TAGTTGCAAA CCCTCGCAAA 
CAGAAGTTGT GCATTCAAGT AAAGGATTCA GTTGGTCTAA CCGATGTCAC 
TATTGGCACT GGAGAGGTTG AGTTAGGATC ACTTAAAGAC ACAGTACCTA 
CAGACAAAAT TGTAACTTTA TATGGAGGAT GGGGCTTACT TGGGAAACGG 
TCAAAAGGGG AAGTACTCCT TCGCCTCACA TACAAAGCAT ATGTCGAGGA 
CGAGGAAGAT GAAGGGGTAA AAAATGAGTT TGCTGCGGGC TATGTTTCAG 
ACGAGGATGT GCTAGATTAT GTCCAAGACA GTACAAGTAA GCAAAGTGAC 
ATGGATGGTA AAGAGAGAGA GACCTTCATG GATCTGCTGG CCGCGCTGCT 
TGTCAGCGAG GAATTTCAAG GCATTGTGTC GTCGTCTGAA CCCGGAAGCT 
TGAGAGATAG TGAGCAGGCT GCTAAATCCA GAGATGGTGA AAATGCTGCA 
GCAGCTGCTG ATACAGGGAC TGTATCCAAT AGCTCCACAG ATACTGCTCT 
AGTGTGGCTT GCTGCCATAA CAAGTGTGAT GGTGCTGGTC TCATCCAACC 
TTGGTGGTTC AGGCTATTTC AACCCTTGAA GAGTTGATGC ATGAAGAATC 
TGATCTGACT GGAGTATTTG GACGATCCAT CTGTCTGAAT CTGATCATCC 
GCAGCTAGTA GCAGAGGTCG TTTTGTTTTG ATTTTTTTTA ACTTTATTTT 
TGCCGACAAG TGTATATTCC ATTCCCATGT ATCTAATGTT GCAGAGGAAT 
CAAAGAATGG CTTGGCTTTT GGCGGCTGTC TCTCCTCCCT TTTTCTATTT 
CATACGATTG ACATGATGTA GCATATCCTT TTTGTGCAAC CATCCACGCA 
CATGATTTAA TTTGTGTGAA TGGGAAATTT GGAGTTGCGT TCATCTCTCC 
TCTTGG

Gene models with high sequence identity

AT3G19830.2 [+] show detail - Calcium-dependent lipid-binding (CaLB domain) family protein
E-value: 8e-172; Score: 600.00

InterPro Scan Digest

Program	Description	E-value
HMMSmart	C2 calcium-dependent membrane targeting	9.69999663390112e-10
HMMPanther	PTHR10774:SF1	2.19999900980707e-05
HMMPanther	PTHR10774	2.19999900980707e-05
ProfileScan	C2 membrane targeting protein	0
HMMPfam	Protein of unknown function DUF2404, transmembrane	0.0018
HMMPfam	C2 calcium-dependent membrane targeting	2.4e-08
superfamily	C2 calcium/lipid-binding domain, CaLB	1.29999924468183e-18
Gene3D	G3DSA:2.60.40.150	5.09999882440013e-15

See the detailed result >

AT3G19830.2

Model type: Protein coding
Short Description: Calcium-dependent lipid-binding (CaLB domain) family protein
Computational Description: NTMC2T5.2; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2404, transmembrane (InterPro:IPR019411), C2 membrane targeting protein (InterPro:IPR018029), C2 calcium/lipid-binding domain, CaLB (InterPro:IPR008973), C2 calcium-dependent membrane targeting (InterPro:IPR000008); BEST Arabidopsis thaliana protein match is: N-terminal-transmembrane-C2 domain type 5.1 (TAIR:AT1G50260.1); Has 1308 Blast hits to 1143 proteins in 177 species: Archae - 0; Bacteria - 2; Metazoa - 350; Fungi - 235; Plants - 647; Viruses - 0; Other Eukaryotes - 74 (source: NCBI BLink).
Link: InterPro Scan - TAIR