K05406

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K05406

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K05406

Determination of introduced cDNA(s)

  • J013127D07 - Rice Full-length cDNAs - Original: J013127D07

    full reading [+] show sequence

    Nucleotide sequence: J013127D07 - full reading 
    GATACTCTTG TTAACAAGTG TTATCACCAT ATTGCAACCT CTCAACCTCC 
    TTCCTCTGCC ATGGAAACCA TGCTCTCTCT TCTCACACAT GCCCTCCTCT 
    TGCAAACAGT CACCTCTCAG ACCATCAATG GTGATGATCT CTCAGCACTC 
    TTGTCATTCA AATCCCTCAT AAGGGATGAC CCAAGAGAGG TGATGTCATC 
    TTGGGACACC GCTGGCAATG GTACAAACAT GCCAGCACCT GTCATCTGCC 
    AATGGACTGG TGTTTCCTGC AACAATCGCC GGCATCCAGG TCGCGTAACC 
    ACTCTCCGTC TGAGTGGCGC TGGCCTAGTC GGCACCATCT CCCCTCAGCT 
    CGGCAACCTG ACCCACCTCC GTGTCCTTGA TCTGTCAGCC AACAGCCTCG 
    ATGGTGATAT CCCAGCTAGC CTTGGTGGTT GTCGAAAGCT TCGTACATTG 
    AACTTGAGCA CGAACCACCT GTCAGGTTCA ATCCCTGATG ATCTTGGTCA 
    GTCATCAAAG CTTGCCATTT TCGATGTCGG CCACAACAAT CTTACTGGTA 
    ATGTTCCCAA GTCATTCTCC AACCTCACAA CACTTGTGAA GTTTATCATA 
    GAGACGAACT TCATTGATGG CAAAGATTTG AGCTGGATGG GTAACCTCAC 
    ATCATTGACA CACTTCGTTC TTGAAGGGAA CCGTTTCACT GGTAACATCC 
    CTGAATCTTT TGGTAAAATG GCTAATCTTA TTTACTTTAA TGTCAAAGAT 
    AATCAGTTGG AAGGCCATGT TCCTCTACCG ATCTTCAATA TTTCTTCCAT 
    TAGATTCTTG GATCTTGGTT TCAACAGACT GTCAGGATCA CTTCCACTCG 
    ATATTGGTTT TAAGCTTCCC AGGATAAAAA TTTTTAGCAC TATTGCTAAC 
    CATTTTGAGG GCATAATACC ACCGACCTTC TCAAACGCAT CTGCTCTCGA 
    ATCCTTGCAA CTTCGTGGAA ACAAATATCA CGGCATGATT CCTAGGGAAA 
    TTGGCATCCA TGGTAACCTG AAGTTCTTTG CGTTAGGAGA CAATGTGCTC 
    CAAGCCACAC GGCCTAGTGA TTTGGAATTT TTTACATCAT TGACCAATTG 
    TAGCAGCTTG CAAATGCTAG ATGTTGGCCA GAACAACCTT GTTGGTGCAA 
    TGCCAATTAA CATTGCAAAC CTGAGCGGAG AGCTCTCATG GATTGACCTA 
    AGTGGCAACC AATTAATTGG GACCATACCT GCAGATTTGT GGAAGCTTAA 
    ACTTACATCT CTCAACCTGT CATATAATCT CTTCACAGGA ACTTTACCTC 
    ATGATATTGG CTGGCTTACA AGAATCAATT CTATCTATGT ATCACATAAT 
    AGAATCACTG GGCAGATTCC ACAATCATTA GGCAATGCCT CACAGTTGAG 
    CTCTCTCACT TTGTCAAATA ATTTTCTGGA TGGAAGCATT CCATCAAGCC 
    TTGGCAATCT CACAAAACTT CAATACTTGG ATCTTTCCGG TAACGCCTTG 
    ATGGGCCAAA TCCCACAAGA AATACTTACA ATACCTTCCC TTACCAAACT 
    TCTCAGCCTC TCCAACAATG CTCTAAGTGG CTCTATTCCA AGACAGATTG 
    GGCTCTTGAA CAGCCTTGTC AAAATGGATC TCTCAATGAA TAAGCTATCT 
    GGTGAAATCC CAAAAGCTAT TGGCAGCTGT GTCCAATTGA GTTTCCTAAA 
    TTTCAAAGGA AATCTTCTCC AGGGACAAAT ACCAGAAAAT CTGAACAATT 
    TGAGGAGCCT TGAAATCCTT GATCTCTCTA ACAACAACTT GGCAGGTCCC 
    ATACCTGAAT TTCTAGCGAA TTTCACGCTT CTAACTAATC TAAACCTCTC 
    CTTCAACGCA CTGTCAGGTC CTGTTCCAAA TACAGGGATT TTTTGTAATG 
    GCACTATAGT GTCACTCTCA GGTAATACAA TGCTATGTGG CGGCCCTCCA 
    GATTTGCAAT TCCCTTCATG CCCATCTAAA GATTCAGACC AGGCTTCAGT 
    GCATCGACTA CATGTCTTAA TCTTTTGCAT TGTTGGAACT TTGATTTTCT 
    CTTTGTTTTG TATGACTGCA TACTGCTTCA TTAAGACAAG GATGAAACCG 
    AATATCATTG ATAATGAAAA CCTATTTCTT TATGAGACGA ATGAGAGGAT 
    ATCTTATGCC GAACTACAAG CAGCAACCGA GTCATTCTCA CCGGCAAATT 
    TGATTGGTTC TGGAAGCTTT GGCAATGTTT ACATTGGAAA TTTGATTATT 
    GATCAGAATC TAGTACCTAT TGCAGTCAAG GTTCTTAACC TTAGCCAACG 
    AGGAGCCAGT AGAAGTTTCT TGACTGAGTG TGATGCTCTT AGGAGAATTC 
    GACATCGGAA ACTTGTCAAG GTGATCACCA TATGCAGTGG ATCAGACCAA 
    AATGGTGATG AGTTCAAGGC GCTTGTCCTA GAATTCATTT GTAATGGAAG 
    TTTAGATGAG TGGCTGCATG CAAGCACGGC AGCAATTAGC ACAAGCTACA 
    GAAGGCTAAA TCTGATGAAA AGGCTGCATA TTGCTCTTGA TGTGGCAGAG 
    GCATTGGAAT ATCTTCACCA TCATATTGTG CCGCCTATAG TTCACTGTGA 
    TATTAAACCA AGCAACATTC TTTTAGACGA TGACATGGTG GCGCATGTTA 
    CGGACTTTGG TCTAGCAAAG ATAATCAATA TTGCTGAACC GTGCAAAGAA 
    AGCAGCTCAT TTGTAATTAA AGGAACAATT GGATATGTTG CACCAGAATA 
    TGGCTCAGGA TCTCCGGTCT CTATGGATGG GGACATATAT AGCTATGGGG 
    TGTTGTTGTT GGAAATGTTT ACTGGAAGAA GACCAACTGA CAATTTTATC 
    AATGGTATGG CAAGTCTTAT CGATTATGTC AAGACAGCCT ATCCTAACAA 
    TCTATTGGAA ATATTGGACA CTAATGCAAC CTACAATGGA AACACCCAAG 
    ATATGACACA ACTAGTTGTT TATCCTATAT TTCGACTTGG TCTAGCATGC 
    TGCAAGGAAT CACCAAGGGA AAGAATGAAG ATGGATAATG TAGTCAAGGA 
    ATTGAATGCT ATAAAGAAGG CATTCTCAGC TCATACATAT GCCTGATAAT 
    GAATTTCGAG CAACGAAGTA ATCTGGGTAA GCAATGAATG TAACTAGATT 
    TGGTTGTCTG CTTGAGAAGT TGTTACTTAC TGAAGCATAC TTTGTTTGTT 
    TCTGAAGTCC AGAATATTGT CAGTACAGTT TATTTTCTTC TCTTCTTGTA 
    ATTTTTATCC ATTTCATTTT TGT

    Gene models with high sequence identity

    1. AT3G47570.1 [+] show detail - Leucine-rich repeat protein kinase family protein
      E-value: 0; Score: 671.00

     

    InterPro Scan Digest

    Program Description E-value
    Gene3D no description 3.3e-58
    Gene3D no description 3.7e-17
    Gene3D no description 2.5e-61
    Gene3D no description 1.9e-12
    Gene3D no description 9.9e-46
    PatternScan Protein kinase, ATP binding site 0
    PatternScan Serine/threonine-protein kinase, active site 0
    HMMPfam Serine-threonine/tyrosine-protein kinase 9.8e-39
    HMMPfam Leucine-rich repeat 0.19
    HMMPfam Leucine-rich repeat 0.11
    HMMPfam Leucine-rich repeat 0.82
    HMMPfam Leucine-rich repeat 0.75
    HMMPfam Leucine-rich repeat 0.25
    HMMPfam Leucine-rich repeat 0.076
    HMMPfam Leucine-rich repeat-containing N-terminal domain, type 2 6e-09
    superfamily L domain-like 3.2e-68
    superfamily Protein kinase-like domain 3.6e-68
    superfamily L domain-like 4.7e-64
    ProfileScan Protein kinase, catalytic domain 35.934
    FPrintScan Toll-like receptor, leucine rich repeat-containing 3e-05
    FPrintScan Toll-like receptor, leucine rich repeat-containing 3e-05
    HMMPanther LEUCINE-RICH REPEAT TRANSMEMBRANE PROTEIN KIN 2.4e-222
    HMMPanther SERINE-THREONINE PROTEIN KINASE, PLANT-TYPE 2.4e-222
    HMMSmart Leucine-rich repeat, typical subtype 7.1
    HMMSmart Leucine-rich repeat, typical subtype 87
    HMMSmart Leucine-rich repeat, typical subtype 240
    HMMSmart Leucine-rich repeat, typical subtype 18
    HMMSmart Leucine-rich repeat, typical subtype 130
    HMMSmart Leucine-rich repeat, typical subtype 52
    HMMSmart Serine/threonine-protein kinase domain 2.3e-21
    HMMSmart Tyrosine-protein kinase, catalytic domain 1.6e-13

    See the detailed result >

    AT3G47570.1

    Model type
    Protein coding
    Short Description
    Leucine-rich repeat protein kinase family protein
    Computational Description
    Leucine-rich repeat protein kinase family protein; FUNCTIONS IN: protein serine/threonine kinase activity, kinase activity, ATP binding; INVOLVED IN: transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation; LOCATED IN: plasma membrane; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Leucine-rich repeat-containing N-terminal domain, type 2 (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: Leucine-rich repeat protein kinase family protein (TAIR:AT3G47580.1); Has 213556 Blast hits to 133070 proteins in 4776 species: Archae - 194; Bacteria - 22980; Metazoa - 68117; Fungi - 10236; Plants - 86850; Viruses - 328; Other Eukaryotes - 24851 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR