K05603

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Phenotypes

Morphological phenotypes

Generation	Anatomical entity /structure development stage	Phenotypes
T2	seed (PO:0009010)	increased length (PATO:0000573) (Seed::Shape::long)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K05603

Determination of introduced cDNA(s)

J033119N19 - Rice Full-length cDNAs - Original: J033119N19

full reading [+] show sequence

GTATCGTTTA CTCCTCCGTC GATTTCCACT TTCGCCAAAC CTCGCGGCCG 
TCGAGCTCCG CCGCCGGAGA AAAAGATGGC CGACGACAGC GCCTCCCCGT 
CGCCGTCCTC GGCCTCGCCG CTCCAGCACC ACCGCGAAGC CCTCAAGTCG 
TCAGTGCGCA ACACGGCAGC TAGCCGGAGG CGGGAACAAG CTATTGCGAT 
TGGGAAGGAA AGACGGGAAG CCTTGATCCG TGCAAAGCGT GTGTGTCGAG 
CTCCAATTTC TGGCAGTGAT GAAGCTGAAA TGGAAGAGGG TGATATGGTG 
GTCGATGAGG AGAAAGCATG TCTTGAGGCA AAGACTGCTC ATGCTGTTGA 
AGAATTGAAA TCTGCTTTGT CAATCCAGGG GAAAGGCGTT CAGAAGAAGA 
AGATAGAGGC GCTTCGTGAT TTGAGACGCT TGTTGTCACA GCCTGAAGTA 
CCTCTAGTTG ATACTGCAAT TAAAGCTGGA GCAGTCCCTC TTTTAGTGCA 
ATATCTATCC TTTGGATCAT CAGATGAGCA GTTGCTAGAG GCAGCTTGGT 
GCCTTACAAA CATAGCAGCT GGGGAACCAG AAGAAACAAA ATCCTTGCTG 
CCTGCTCTAC CATTGCTTAT TGCTCACCTT GGTGAAAAGA GCTCCACACT 
TGTTGCCGAG CAATGTGCAT GGGCCATTGG TAATGTTGCT GGTGAAGGAG 
CAGAGCTGAG AAGCACATTA CTTGCACAAG GTGCTTTGCG GCCTCTTACC 
CGTTTAATGT TCTCCAGTAA AGGTTCTACA GCAAGAACTG CTGCTTGGGC 
TATGTCAAAT CTCATCAAGG GGCCTGATCC AAAGGCTGCA AATGAGCTTA 
TTACCATTGA TGGCGTGCTA AATGCAATTA TAGCGAGCTT GGAAAAGGAG 
GACGAAGAGT TAGCAACTGA GGTGGCATGG GTTGTGGTCT ATCTTTCAGC 
ACTTTCAGAC AGAGGTATTA GCTTAATAGT AAGAAGTTCT GTGCCTCAGC 
TGCTGATAGG ACGACTGTTC TCATCTGAGA ACTTGCAGTT GCTGATCCCA 
GTGCTTCGTG GTTTGGGAAA TCTTATTGCC GCTGATGACT ACATGGTTGA 
TTCAGTCCTA ACTGTTGGAC ACAATATCAT TGATCAAGCA TTGTCAGGTC 
TTATAAAATG TTTGAAGAGT GATAACAGGG TTCTCAGAAA GGAGTCATCA 
TGGGCATTGT CAAATATAGC AGCAGGCAGT TTTGAGCACA AGAAACTGAT 
TTTTGCCAGT GAGGCCACGC CTGTGCTGAT ACGCCTTGTC ACCAGCATGC 
AATTTGATAT TCGCAGGGAA GCAGCATACA CCCTAGGAAA TCTGTGTGTT 
GTCCCTACTG GAAATTGCGA ACTCCCAAAG ATAATCGTGG AACATCTAGT 
CGCTATCGTA GATGGTGGAG CCCTTCCAGG ATTTATACAC TTGGTCAGGT 
CTGCTGATGT AGATACCGCA GGGCTTGGTC TTCAGTTCCT AGAACTGGTG 
ATGAGGGGGT ATCCCAATAA GCAAGGCCCA AAGCTTGTGG AAATGGAGGA 
CGGCATTGAG GCCATGGAGA GGTTTCAATT CCACGAGAAC GAGCAGATGA 
GGAACATGGC CAATGGTTTG GTCGACGAAT ACTTCGGTGA GGATTATGGC 
CTCGACGAGT GACTCAACTA ATTACCATTC GTACATCAGG TTAAATTGTA 
ATGGCAGCAG CTGTTCATGT GTTCGTACTG TAAAAATGCA TTCTCAGTTT 
CTAACAGCAC TGGAACTTTA GAATGAGAAA ATCATTTGCT TGTTACTGTT 
CGTCTTACTG CCACTTGTTG ACGTAATTTG GAAAGAAAAA AAAGGTTGCA 
TTAGCATCTT GTTATGT

Gene models with high sequence identity

AT5G03070.1 [+] show detail - importin alpha isoform 9
E-value: 4e-170; Score: 595.00

InterPro Scan Digest

Program	Description	E-value
HMMPfam	Armadillo	3.9e-07
HMMPfam	Armadillo	1.7e-05
HMMPfam	Armadillo	9.6e-05
HMMPfam	Armadillo	2.8e-05
HMMSmart	Armadillo	0.0012
HMMSmart	Armadillo	36
HMMSmart	Armadillo	1.5
HMMSmart	Armadillo	110
HMMSmart	Armadillo	25
HMMSmart	Armadillo	7.7
superfamily	Armadillo-type fold	2.4e-66
HMMPanther	IMPORTIN ALPHA	1.5e-148
Gene3D	Armadillo-like helical	3.1e-75

See the detailed result >

AT5G03070.1

Model type: Protein coding
Short Description: importin alpha isoform 9
Curator Summary: Putative importin alpha isoform. When overexpressed can rescue the impa-4 decreased transformation susceptibility phenotype.
Computational Description: importin alpha isoform 9 (IMPA-9); FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Armadillo-like helical (InterPro:IPR011989), Armadillo (InterPro:IPR000225), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: importin alpha isoform 6 (TAIR:AT1G02690.2); Has 2139 Blast hits to 1862 proteins in 255 species: Archae - 0; Bacteria - 2; Metazoa - 1001; Fungi - 275; Plants - 485; Viruses - 0; Other Eukaryotes - 376 (source: NCBI BLink).
Link: InterPro Scan - TAIR