K06506

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K06506

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K06506

Determination of introduced cDNA(s)

J033089L01 - Rice Full-length cDNAs - Original: J033089L01

full reading [+] show sequence

GGATCCAGTC CTACTCTTCT CTTTGCTGCC GCTTGGAGCC GGAGAAGGTG 
ATGGGGAGTG AGTGTGTTGA GTGAAGCCAT CGGCATAGCC GTCGCCGTCG 
ACGCCGCTGC GTTCGCGGCC CGAGAAGGCG AGCCCGGAGA AGTAGAGAGT 
CGTCGATCTT GGCTGTTGTT CTGGTGTGGT GCCTGCTGGT GAGTCGATTT 
GAGGGAGGAA GAACTGACTT GACAGTTTCT TCACTCGCTG CTAGAGAAAA 
TGATGAGCCG ATCCGCATCT GCACTTCAAG TCCTTTTGGT TTTTGCAACT 
GTTTTTGCTG CGACTCAATG GGCCACTTCA TCTGCCATGT ACTGCAACGA 
CTTGACAGCA AGCGTGCATC GGCCACACAA TAAGGGTGGG GCAGAGCTCT 
TTGTGCCTGC TGGAAGGTGG TTGACTGGGA GTTTTAATCT TATCAGTCAT 
CTCACTGTGT CACTTGACGC CGATGCAGTA ATAATCGGAT CTCAAGATTC 
ATCTGACTGG CCAGTTATTG ATCCTCTGCC ATCTTATGGG CGTGGCAGAG 
AACTCCCTGG TAAAAGACAC CAGAGTCTTA TTTTTGGATC CAATCTTACT 
GATGTAATAA TAACTGGTGC TAATGGCACC ATTGATGGCC AAGGTGAACT 
TTGGTGGAAC TGGTTTCACA ATCACACACT AAATTATACC AGGCCCCCTC 
TTCTTGAACT GATGTACTCT GACAGGGTTG TTATTTCCAA TTTAACCTTC 
ATGAATGCAC CATTTTGGAA TATTCATCCT GTATACTGCA GCCAAGTTCT 
TGTCCAGCAT CTGACGATCC TAGCACCTAT CAGTTCACCA AACACTGATG 
GCATTGATCC AGACTCATCC TCAAATGTGT GCATCGAAGA TTGCTACATC 
AGAAACGGCG ATGACATTGT CGTCATCAAG AGCGGTTGGG ACGAGTATGG 
TATCTCTTTT GCCCATCCTA GCTCCAACAT TAGCATCCGC AACATCACTG 
GACAGACAAG GAACAGCGCA GGAATAGCCT TTGGAAGCGA GATGTCAGGT 
GGTATATCAG ACGTTCGAGC TGAGGGCCTT CGTTTCATCA ACTCGGTGCA 
TGGAATCAGA ATCAAGACTG CCCCAGGGCG CGGTGGGTAT GTGAAAAACA 
TATACATAGC TGATGTGAGC ATGGACAATG TCTCAATAGC CATCAGGATC 
ACTGGAAACT ATGGGGAACA TCCTGACGAC AACTATGACA AGAATGCGCT 
TCCAGTCATT AGCAACATAA CGATAAAAAA TGTGGTGGGG GTAAACATTG 
GTACTGCAGG AATGTTGCTG GGCATCCAGG GGGATATCTT TAGCAACATT 
TGCTTATCAA ATGTGTCCCT CAGTAGCAAA TCTGCTGATC CTTGGAATTG 
TTCGCTCATC GAAGGGTTCT CAAATTCTGT AGCTCCTGAG ATATGTGAGC 
AACTTTGGCC CAGCCCTGGG CCAGGCCAAG TATGCTATGA TGGTAATAGC 
TACCCAGTGC CAGCAGCACA GCAGCCATAT AAGTCGGGCG CTACCCGGTT 
ACAAAATCCT TTCCTCAAGT TCATTTCTCT ATACAGTTAG ACGCCCCAAT 
CATCAACTAT GTCCTTGTAG ATTTTTATTT TTGGTGCAAG TGATTGTTGA 
AGACTTCCAA TTTTGCCTTA AGGCTTGCCT TGTGTAGTCG TGTGTATAGA 
GCTTTGTGGA GATAACTGTT GGTGTGATGT TATTATTTCA ATGTCCTGTA 
TTGTTTGGAT TCTTACTCTA AATAAAAGCA ACCCATGTTT ATAACTTC

Gene models with high sequence identity

AT3G62110.1 [+] show detail - Pectin lyase-like superfamily protein
E-value: 5e-145; Score: 511.00

InterPro Scan Digest

Program	Description	E-value
HMMPfam	Glycoside hydrolase, family 28	9.2e-41
superfamily	Pectin lyase fold/virulence factor	2.4e-85
Gene3D	Pectin lyase fold	6.4e-96
HMMSmart	Parallel beta-helix repeat	4400
HMMSmart	Parallel beta-helix repeat	62
HMMSmart	Parallel beta-helix repeat	2100
HMMSmart	Parallel beta-helix repeat	1200
HMMSmart	Parallel beta-helix repeat	600
HMMSmart	Parallel beta-helix repeat	5600

See the detailed result >

AT3G62110.1

Model type: Protein coding
Short Description: Pectin lyase-like superfamily protein
Computational Description: Pectin lyase-like superfamily protein; FUNCTIONS IN: polygalacturonase activity; INVOLVED IN: response to cyclopentenone, carbohydrate metabolic process; LOCATED IN: vacuole; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Pectin lyase fold/virulence factor (InterPro:IPR011050), Glycoside hydrolase, family 28 (InterPro:IPR000743), Pectin lyase fold (InterPro:IPR012334), Parallel beta-helix repeat (InterPro:IPR006626); BEST Arabidopsis thaliana protein match is: Pectin lyase-like superfamily protein (TAIR:AT4G23500.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link: InterPro Scan - TAIR