K06726

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K06726

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K06726

Determination of introduced cDNA(s)

  • J013000O13 - Rice Full-length cDNAs - Original: J013000O13

    full reading [+] show sequence

    Nucleotide sequence: J013000O13 - full reading 
    GCCTAATCAA TCTCTCGCGT TCTTGGCCGC CGTCTCCATC TCTCTCTCAC 
    TCTCTCTCTC TCTCTCTCTC TCTCTCTCTC GGCTTTGGTT TGCCGCGTTA 
    CATCCGCGAA AAGGAGGAGG AAACAGGCGA AGCGAGGAGC TCCAGAGGGA 
    GAAATTCCGT AGAAAGCGAG GAGCGTCGGC TCCCGCTTTT GATCTGTGGG 
    AATTCAAACG GTGGTGCTTG CTATTTCGAC GTAAGGGCTT AAACGAATTG 
    GTTTGTCACT ATTTTGGTTT CAACACAGAA GGTTGTGGGA CCATGGTTTC 
    AAAATCTTAT TCAAATCTGT TAGGAATGAG TTGTGGAGAT GGAGTTGACT 
    TTCGGCAACC TTTTAAATCT CTTCCTCGTG TGGTAACCTC TCCTGGCATT 
    ATATCTGATC CTGATTGGGA CACTAGAAGT GATGGCGATT CAGTTGGTTC 
    AGCATTTTCT GTTGAGAGGA AAATAATTGT TGCCAACTTA CTTCCACTGA 
    ACTGTACAAA AGATGAAGCT GGGCAATGGT CCTTCTCAAG GGATGATGAT 
    GCACTGCTCA TGCAACTTAA AGATGGTTTT TCAAATGAGA CTGATGTCAT 
    TTATGTGGGT AGTTTGAAGG TTCAGGTAGA TCCCAGTGAG CAGGATCAAG 
    TTGCACAGAA GCTTCTTAGA GATTACCGAT GCATACCTAC TTTTCTCCCT 
    CCTGACCTCC AGCAGCAGTT CTATCATGGC TTCTGTAAAC AGCAATTGTG 
    GCCACTTTTC CACTATATGC TTCCCATTTG TCTTGACAAA GGTGAGCTCT 
    TTGATCGCTC CCTGTTTCAA GCCTATGTCC GAGCTAACAA ACTCTTTGCC 
    GACAAAGTTA TGGAAGCTAT TAATACGGAT GATGATCATG TCTGGGTTCA 
    TGATTATCAC CTCATGCTTC TCCCAACATT TCTGAGGAAG AGGTTACACC 
    GAATAAAGCT AGGATTTTTT CTCCACAGTC CATTTCCCTC CTCAGAAATC 
    TACAGGTCAC TGCCTGTAAG GGATGAGATC CTGAAGTCAT TGCTTAATGC 
    TGATCTTATT GGTTTCCAAA CATTTGACTA TGCCCGCCAC TTCCTTTCTT 
    GTTGCAGCAG ATTATTGGGT CTGCATTATG AATCAAAGCG CGGTTACATT 
    GGAATAGATT ACTTTGGAAG AACAGTGAGC CTGAAGATCC TCTCAGTGGG 
    TGTCCATGTT GGCCGTCTTG AGTCCATCCT AAAGTTGCCT GCTACAGTAA 
    AGAAGGTTCA AGAAATTGAA CAAAGGTATA AAGGCAAGAT GCTCATGTTA 
    GGTGTAGATG ACATGGACAT CTTCAAAGGA ATCAGTCTAA AACTGCTTGG 
    GTTGGAGCTA CTTCTAGATA GGAACCCGAA ACTCAGAGGG AAGGTTGTCC 
    TTGTACAGAT TGTCAATCCA GCAAGAAGCA CAGGGAAAGA CGTGGAGGAA 
    GCAATAACAG AATCTGTCTC TGTAGCTGAA AGAATCAACC TTAAGTATGG 
    CTCTGTAGAT TACAAGCCTG TTGTCCTTAT TGATCATCGC ATACCATTTT 
    ATGAAAAGAT TGCATTCTAT GCTGCATCTG ATTGTTGTAT TGTAAATGCT 
    CTGAGGGATG GTATGAACTT GGTACCATAT GAGTACACTG TTTGCCGGCA 
    GGGAAATGAG GAGATAGATA ATGCCAGAGG CAGTGACACA AATTGCCATC 
    ACACAAGCAC ACTAATTGTG TCTGAGTTTG TTGGTTGCTC ACCATCTCTT 
    AGTGGTGCTT TCAGGGTAAA TCCTTGGAGT GTTGACGATG TGGCTGATGC 
    CTTACACCAT GCAACAGACT TGACTGAATC CGAGAAAAGG CTACGGCATG 
    AAAAGCACTA CCGTTATGTT AGATCTCATA GTGTTGCTTA CTGGGCTCAT 
    AGCTTTGCTC AAGATCTGGA AAGGGCATGC AAAGATCACT ACAGCCGAAG 
    GTGCTGGGCT ATTGGTTTTG GTCTGAACTT CAGAGTTATT GCTCTTTCTC 
    CTGGCTTTAG AAAGCTCTCT TTGGAACACT TTGCTTCTTC TTACAACAAG 
    GCTACCAGAA GGGCAATATT TCTTGACTAT GATGGCACTC TTGTACCCCA 
    GTCATCAATC AATAAAGCTC CAAGCGATGA ACTTATTACT ATTCTCAACA 
    GCTTGTGTGA TGACCCGAAG AATGATGTAT TCATAGTCAG TGGAAGAGCG 
    CGTAGTTTGC TTGATGAGTG GTTTGCTCCA TGTCAGAAGC TTGGTATTGC 
    AGCAGAACAT GGCTATTTTG TCAGATGGAA CAAAGCAGCT GAATGGGAAT 
    CAAGCTATCC AAACCATGAT TTTGAGTGGA AGCACATCGC TGAACCGGTC 
    ATGCAAGTTT ACACCGAAAC AACTGATGGG TCCTCCATAG AGCCAAAGGA 
    AAGTGCTCTA GTATGGCATT ATTTGGATGC AGACCATGAC TTCGGTTCCT 
    GCCAAGCAAA GGAACTACTG GGTCATCTTG AAAGGGTGCT ATCAAATGAA 
    CCTGTTGTTG TGAAGTGTGG TCATTACATT GTTGAAGTCA AACCACAGGG 
    AGTTAGCAAG GGTCTTGTTG TGGACAAGGT AATTCACAGA TTGATGAACA 
    ACGGGAAGAC GCCTGATTTC GTAGTGTGCA TCGGTAACGA TCGATCTGAT 
    GAGGACATGT TCAAAAGCAT CGACAGCATG ACCTCCAGCT CCGCATTCCC 
    TGCAGTTCCG GAAGTCTTTG CCTGTTCAGT TGGTCAGAAA CCCAGCAAGG 
    CAAAGTACTA TGTCGACGAT GCTGGTGAAG TAGTAAGATT GCTCAAGAAT 
    GTAGCTGGCA TTTCGTCGCA CCGGGAGGCC GTCAGCCATG GACGTGTGAC 
    CTTCAGGGAT GTGATGGATT ATGTGGAGTG AACCACCTAA TCTTTGTAAC 
    ATCCAAACTT GTGTACATTC CAATGTCTTC ATCTAGATTT GGCCAAAAGC 
    ATGAATCATC ACCACCATTA GGACAACTAC AGGAGTGCAA GCGGAAGCTC 
    TGCATTTTTA GTTTAGGTGA TGTATACTCA TATGTAGGCA ATTTTGATAG 
    TTGATGAGGT TCTTGCTGGA GAACTGCACT GTGAAAGAAA AGCCCCCTGG 
    CTTTGAATAG CCATCGACTT GTTTCACTTG CCAGTTATTA CCAGTTGCCA 
    GTGTTTACCT GAATGACTGA ATCCAATCTC CTGCTTC

    Gene models with high sequence identity

    1. AT1G60140.1 [+] show detail - trehalose phosphate synthase
      E-value: 0; Score: 999.99

     

    InterPro Scan Digest

    Program Description E-value
    superfamily UDP-Glycosyltransferase/glycogen phosphorylas 1.6e-149
    superfamily HAD-like 1.7e-49
    HMMPanther TREHALOSE-6-PHOSPHATE SYNTHASE 1.4e-235
    Coil coiled-coil 0
    HMMTigr Trehalose-phosphatase 6.2e-27
    HMMTigr HAD-superfamily hydrolase, subfamily IIB 3.7e-12
    Gene3D no description 7.1e-75
    Gene3D no description 1e-30
    HMMPfam Glycosyl transferase, family 20 4e-173
    HMMPfam Trehalose-phosphatase 7.6e-75

    See the detailed result >

    AT1G60140.1

    Model type
    Protein coding
    Short Description
    trehalose phosphate synthase
    Curator Summary
    Encodes an enzyme putatively involved in trehalose biosynthesis. The protein has a trehalose synthase (TPS)-like domain that may or may not be active as well as a trehalose phosphatase (TPP)-like domain.
    Computational Description
    trehalose phosphate synthase (TPS10); FUNCTIONS IN: transferase activity, transferring glycosyl groups, trehalose-phosphatase activity; INVOLVED IN: trehalose biosynthetic process, metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: HAD-superfamily hydrolase, subfamily IIB (InterPro:IPR006379), Glycosyl transferase, family 20 (InterPro:IPR001830), Trehalose-phosphatase (InterPro:IPR003337); BEST Arabidopsis thaliana protein match is: trehalose-phosphatase/synthase 9 (TAIR:AT1G23870.1); Has 4634 Blast hits to 4564 proteins in 1018 species: Archae - 52; Bacteria - 2697; Metazoa - 162; Fungi - 655; Plants - 601; Viruses - 0; Other Eukaryotes - 467 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR