K07022

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K07022

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K07022

Determination of introduced cDNA(s)

  • J023004J23 - Rice Full-length cDNAs - Original: J023004J23

    full reading [+] show sequence

    Nucleotide sequence: J023004J23 - full reading 
    GTCCGCTTTC TCCTCGATCC AGAGCTATAC ATATCCATCA GCAGCAGCAG 
    CAGCCAAATT CACCATCCTC CAGCGATCGA TCGATCACCT GCAGTACTAG 
    TTCTCTCAAG CTTCTTGGTC GCCGGCCATG AGCTACGGGA GCAGCTCTTC 
    TGGGGGGCGA GGCGGGCGGC GGGTGGAGTA CGGGAGGACG TACGTGGTGA 
    GGCCCAAGGG GAGGCACCAG GCCACCATTG TGTGGCTCCA TGGCCTCGGC 
    GACAATGGCG CAAGCTGGTC CCAGCTACTG GATTCTCTTC CTCTGCCTAA 
    TATCAAATGG ATTTGCCCTA CTGCACCAAC ACGCCCTGTT GCTGCTTTCG 
    GTGGATTCCC TTGCACAGCA TGGTTTGATG TGGAGGACAC TTCCGTGGAT 
    GGCCGTGATG ATATTGAAGG GCTTGATGCT TCAGCTGCAC ACGTAGCAAA 
    CCTACTGTCA TCCGAGCCAT CTGATGTGAA GCTTGGGATA GGTGGTTTCA 
    GCATGGGTGC TGCCGCTGCC CTCCACTCTG CTGCATGCTA TGCTCATGGA 
    AGATTCACAA ACGGCGTTGC CTACCCGGTC ACCCTCAGCG CCGTCATCGG 
    TTTGAGCGGT TGGCTTCCCT GTTCAAGGAC TCTGAAGAGC AAGATGGACA 
    GCTCTCAGAC TGCACTGAGA AGGGCTGGTG CCTTACCAAT CCTGCTCAGC 
    CATGGAAGAG CTGATGAGGT TGTCACCTAC AGAAATGGTG AGAAATCAGC 
    CGATTTCCTG CGAGGCTCGG GTTTTCAGTA TCTGAATTTT AAACCCTACA 
    ACGGGTATAG ACACACTTAC TTAATTTTCC CCATCTTCAT TTTTTTCTCT 
    GAAAACTAGA ATAACTAACA TGATGCCATT TACACAGCCT GGGGCATTAT 
    ACCATCCCTG AAGAAATGGA CGATGTCTGC AAGTGGCTCA GTTCAAGGCT 
    GGGACTTGAC CGATCCCGCG GCTAATTCGA AAATATGAAC CCGGTTCAGT 
    GGCTTTGGTA GTGATGTATA AGAGAAGAAG GTATTGACAA TATACAGGAG 
    AAGGTTGATT AGGATATGTG AATTGTGACA GTCATGGCTT TGGTAGCATA 
    TGTAACACTA TGTGTTTTCC AAACAACTGC ATACCACGTT ACAGTTGTAG 
    TTTTCTACTG ATGTACTTTG TTACCGCTAA AGAGGGATGC GTATAATGTA 
    GT

    Gene models with high sequence identity

    1. AT3G15650.1 [+] show detail - alpha/beta-Hydrolases superfamily protein
      E-value: 3e-80; Score: 45.40

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Phospholipase/carboxylesterase 1.7e-36
    HMMPanther LYSOPHOSPHOLIPASE-RELATED 1.7e-73
    HMMPanther LYSOPHOSPHOLIPASE-RELATED 1.7e-73
    superfamily alpha/beta-Hydrolases 3.7e-38
    Gene3D no description 1.2e-50

    See the detailed result >

    AT3G15650.1

    Model type
    Protein coding
    Short Description
    alpha/beta-Hydrolases superfamily protein
    Computational Description
    alpha/beta-Hydrolases superfamily protein; FUNCTIONS IN: hydrolase activity, carboxylesterase activity; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Phospholipase/carboxylesterase (InterPro:IPR003140); BEST Arabidopsis thaliana protein match is: alpha/beta-Hydrolases superfamily protein (TAIR:AT1G52700.1); Has 2036 Blast hits to 2021 proteins in 596 species: Archae - 6; Bacteria - 783; Metazoa - 348; Fungi - 280; Plants - 199; Viruses - 0; Other Eukaryotes - 420 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR