K07216

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Phenotypes

Morphological phenotypes

Generation	Anatomical entity /structure development stage	Phenotypes
T2	seed (PO:0009010)	increased length (PATO:0000573) (Seed::Shape::long)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K07216

Determination of introduced cDNA(s)

J023012H01 - Rice Full-length cDNAs - Original: J023012H01

full reading [+] show sequence

GTGGCAAGCC TCGCCGACGC CATTGATGCT TTACAAGCGT TGGTGAGAGG 
CCAGGAGAGG CGTGGAGAGG GAGAGTTATG AGCGCAAGGA CATTACGACA 
AGATCGTTAT TCCTAATGGG TGAGATAGGC ATAAACGATT ACAACCACCA 
CTTCTTCCAG AACAGATCCT TCACAGCTGA GATCAAACCC TTAGTGCCAC 
TAGTGATTTT AAAGATTGAA AATGCCACCA AGGTTTTGAT CGACCTTGGT 
GCCAAGACCA TACTGGTTCC AGGGATCCCG CCAATGGGCT GCATTCCGAG 
GTTTCTCAAC TTGCTCCCTA GCAAGAACCA CAATGACTAT GACAAGCTTG 
GATGTCTGAA GTGGCTGAAC GACTTCTCTC AGTACCACAA TCGTGCTCTC 
AAACAAATGT TACAGAGGAT TCATCATGAT CCTACCGTCA CCCTAATCTA 
TGCCGACTAC TATGGAGCAA TGTTGAAGAT AGTTCGAAGC CCTCAGAACA 
ATGGGTTCAC GAAGGAGAGC GTTCTGAGGG CGTGCTGTGG GGTGGGTGGG 
GCCTACAACG CCGACTCGCT GGTGTGCAAC GGCAACGCCA CGACGTCGAA 
CCTGTGCACG GAGCCGTCCA GGTACATCTC CTGGGACGGC CTGCATCTCA 
CCGAGGCCGC CTACCACTAC ATCGCCCGCG GCGTGCTGCA TGGGCCGTAC 
ACCGAGCCTG CCATACCCAC CAGATGCACA GCCTGATCAT ACCCACACAT 
TACACCTTGT TTATCCCAGA TGTATAACCA GAAATACTTA AATTTAAAAC 
GGATGCAAAA TTAGTAAATT ACCTTTATAC TCCCTTTGCT AAGTTGATTG 
TTTGAATTTT CACTTTGATT TGTACATTTT TTTAAACTAC TAGACGATGT 
TTTATAAAAC AAGTCCTTCC GCTACGTTGA TTTTTGTAAA CC

Gene models with high sequence identity

AT1G28610.2 [+] show detail - GDSL-like Lipase/Acylhydrolase superfamily protein
E-value: 2e-49; Score: 193.00

InterPro Scan Digest

Program	Description	E-value
HMMPfam	Lipase, GDSL	1.2e-19
HMMPanther	LATERAL SIGNALING TARGET PROTEIN 2	3.5e-06
HMMPanther	ZINC FINGER FYVE DOMAIN CONTAINING PROTEIN	3.5e-06

See the detailed result >

AT1G28610.2

Model type: Protein coding
Short Description: GDSL-like Lipase/Acylhydrolase superfamily protein
Computational Description: GDSL-like Lipase/Acylhydrolase superfamily protein; FUNCTIONS IN: lipase activity, hydrolase activity, acting on ester bonds, carboxylesterase activity; INVOLVED IN: lipid metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Lipase, GDSL (InterPro:IPR001087); BEST Arabidopsis thaliana protein match is: GDSL-like Lipase/Acylhydrolase superfamily protein (TAIR:AT2G27360.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link: InterPro Scan - TAIR