K07416

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K07416

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)
  • increased length (PATO:0000573)
    (Seed::Shape::long)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K07416

Determination of introduced cDNA(s)

  • J033026M15 - Rice Full-length cDNAs - Original: J033026M15

    full reading [+] show sequence

    Nucleotide sequence: J033026M15 - full reading 
    GGGATTCGAC CATGGCGGCG ACGAGGTCGA CCGCGACGGC GGCGCTCGCG 
    CTCTCCAGAA CCCTCGCCCG CCGCCCCGCC GCCTCCTCCT CCTCTAGAAG 
    AATCTCCCTC GAACTCTCCG CCCCGAGAGG CACCAATCCA TTCCAATCCA 
    CCGCGTTCTC GTCCACCACC ACCGGAGATC CGCCGCCGCC GACGATGGAT 
    TCGCCGATCA AGGTGGTGTC GCACATCGGG GGGAGCGGTG GGGATGGGGG 
    AGGGGGAGCG ATCGACGCGG GGAGGTCGGC GAGGAAGCCG CTGAGCCTGT 
    GGCCCGGGAT GTACCACTCG CCGGTGACCA ACGCGCTGTG GGAGGCGCGG 
    TCCAGCATCT TCGAGCGGAT GATCGACGCC GGGGCCGCGG GGAAGCAGCA 
    GCAGCAGCCA CCGCGGACGG AGCTGCTGAC GAAGACGCCC GCGGGGAGCC 
    GGACCAGCAT CGTGTACAAG TTCGCCACCG ACGACATCCT CCGGGAGCAG 
    TACAGGGACC CGTGGAACGA GGTGCGCATC GGCAAGCTGC TCGAGGACCT 
    CGACGCCCTC GCCGGCACCA TCGCCGTCAA GCACTGTTCT GACGAAGATA 
    GCACAACAAG GCCCCTTTTG CTGGTGACTG CTTCTGTAGA TAAGATGGAG 
    CTAAAGAAGC CAATTTGTGT GGACACTGAT CTGAAGATAG CTGGAGCTGT 
    TACTTATGTT GGCCGTTCTT CAATTGATAT ACAAATTGAA GTGACTCAAG 
    TTGATCAAGA TAGTGATATG CAATCAGATC CAATCGCTCT AACGGCTAAC 
    TTCACGTTTG TTGCACGAGA TTCTATGACT GGAAAGTCTG CTCCAGTGAA 
    CCGCCTTTCA CCAGAAACTG AAAAGGAGAA ACAACTATTC GCAGAGAGGG 
    AAGCAAGGGA CAAGCTGAGA AAAAGAAAGA GAGAAGAACA GAAGGGGGTG 
    TTTGAAAATG GGATAAATAA GCTTCATGTT GAGGCTGAGC GACTAAATAG 
    TTTACTAGCA GAGGGCCGTG TTTTCTCTGA TTTGCCTGCT TTAGCTGATA 
    GAGATAGCAT CTTGCTGAAA GACACTCGCC TGGAGAACTC TCTTATCTGT 
    CAGCCTCAAC AACGGAACTT GCATGGACGA ATATTTGGAG GTTTCTTGAT 
    GCACCGAGCA TTTGAGCTTG CCTTCTCAAC TGCATATGCC TTTGTTGGGC 
    AAAGACCTTG CTTTCTTGAA GTTGATCATG TTGACTTCTT AAAACCAGTG 
    GATGTAGGAG ACTTTCTTCG ATTCAAGTCA TGTGTCTTGT ATACCCAGCT 
    CGACAATGCA GAGCAGCCTC TGGTCAATGT TGAAGTTGTT GCTCATGTAA 
    CAAGGCCTGA GCTCCGGAAG AGCGAGGTTT CCAACACATT CCACTTCACC 
    TTCACCGTCT GCAGCGATGC ATTGAAGAAC GGACTGAAGA TACGCCATGT 
    TGTTCCCTCT ACTGAAGAAG AGGCACGGCG CATATTAGAG CGCATGGACG 
    CAGAGGGTTT GTTCGACTAG TCCTGCAGAA CCGCTTGTTT CAGCCACATG 
    TCTTTTTTTT TACTGATCAA CGTCAGCTAA TGGGAAATGT AAAGATGATT 
    TAAATAACAT CAGATAAGTA GTAGCATGCT GGCAATATAG CGGCAAAATG 
    CTAGTTATAT GATTACTTTT GCAATTCCTT TTGCAGACAT TTGGGGTATA 
    TAATAAACAT AAACCTCGAG ACCC

    Gene models with high sequence identity

    1. AT5G48370.2 [+] show detail - Thioesterase/thiol ester dehydrase-isomerase superfamily protein
      E-value: 2e-162; Score: 569.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther ACYL-COA THIOESTERASE 6.2e-110
    Coil coiled-coil 0
    superfamily Thioesterase/thiol ester dehydrase-isomerase 1.5e-24
    superfamily Thioesterase/thiol ester dehydrase-isomerase 1.1e-23
    HMMPfam Thioesterase superfamily 0.00014

    See the detailed result >

    AT5G48370.2

    Model type
    Protein coding
    Short Description
    Thioesterase/thiol ester dehydrase-isomerase superfamily protein
    Computational Description
    Thioesterase/thiol ester dehydrase-isomerase superfamily protein; CONTAINS InterPro DOMAIN/s: Thioesterase superfamily (InterPro:IPR006683); BEST Arabidopsis thaliana protein match is: Thioesterase/thiol ester dehydrase-isomerase superfamily protein (TAIR:AT2G30720.1); Has 2835 Blast hits to 2174 proteins in 781 species: Archae - 49; Bacteria - 1954; Metazoa - 460; Fungi - 99; Plants - 81; Viruses - 0; Other Eukaryotes - 192 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR