K07442

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K07442

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K07442

Determination of introduced cDNA(s)

  • J023078L22 - Rice Full-length cDNAs - Original: J023078L22

    full reading [+] show sequence

    Nucleotide sequence: J023078L22 - full reading 
    GAGCGCGCCG CCACCTCGCG TCGGCATCCT CCTCCGCCTC CGCCGCCGCC 
    GCCTCGCCGC CCAAGGTAAG GTAAGCCATG GTGAAGCACA ACAACGTCAT 
    CCCGAATGGG CACTTCAAGA AGCACTGGCA GAACTATGTC AAGACATGGT 
    TCAACCAGCC CGCCCGCAAG CAGAGGCGCC GCATCGCTAG GCAAAAGAAA 
    GCTGTGAAGA TCTTCCCCCG CCCTACTTCT GGACCACTTC GCCCCATTGT 
    TCAGTGCCAA ACACTTAAGT ACAACATGAA GTCTAGGGCT GGAAGGGGCT 
    TCACCCTTGA AGAGCTGAAG GCAGCTGGGA TCCCCAAGAA GTTTGCCCCA 
    ACCATTGGCA TCTCAGTGGA TCACCGCCGT AAGAACCGCT CACTTGAAGG 
    TCTGCAGGCC AATGTCCAGA GGCTGAAGAC CTACAAGGCC AAGCTTGTCA 
    TCTTCCCAAG ACGTGCCCGC AAGGTCAAGG CTGGTGACTC GACTCCTGAG 
    GAGCTTGCCA CAGCCACCCA GGTCCAGGGT GACTACATGC CTATCACCCG 
    TGGCGAGAAG CGCTCGGTTG AGGTCGTGAA GGTCACGGAT GACATGAAGG 
    CATTCAAGGC CTACGCCAAG CTGCGCGTGG AGAGGATGAA CCAGCGCCAC 
    ATCGGTGCCC GGCAGAAGAG GGCGGCCGAG GCTGAGAAGG AAGAGAAGAA 
    GTGAAAGGAT TGCAACCTGC AACGTTAAGA ATAGATGCCC TAAGTTTTAT 
    TACCATTATT GTTATCAGCT TCTCCTGATG CGAGACTGGC ATTCTGATCT 
    TGCTGCTGTC TGTCTACTCT TCAGTTTGAG CTTGTTTGGG TTTTTGTCTG 
    AAGTGAACCA AACTAAGTGC ATACTACTTG TCTTAAGATG AATTCAGTCA 
    TTTCGC

    Gene models with high sequence identity

    1. AT3G49010.3 [+] show detail - breast basic conserved 1
      E-value: 6e-83; Score: 304.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther Ribosomal protein L13e 2.2e-121
    PatternScan Ribosomal protein L13e, conserved site 0
    HMMPfam Ribosomal protein L13e 2e-93

    See the detailed result >

    AT3G49010.3

    Model type
    Protein coding
    Short Description
    breast basic conserved 1
    Curator Summary
    Encodes 60S ribosomal protein L13. Homolog of human breast basic conserved 1 (BBC1).
    Computational Description
    breast basic conserved 1 (BBC1); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation, ribosome biogenesis; LOCATED IN: in 8 components; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L13e, conserved site (InterPro:IPR018256), Ribosomal protein L13e (InterPro:IPR001380); BEST Arabidopsis thaliana protein match is: Ribosomal protein L13e family protein (TAIR:AT5G23900.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR