K08145

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K08145

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K08145

Determination of introduced cDNA(s)

  • J033061A09 - Rice Full-length cDNAs - Original: J033061A09

    full reading [+] show sequence

    Nucleotide sequence: J033061A09 - full reading 
    GTCTGATGGG GTCGCAGCTT CTCGACCTCC CGTACTCGTT TCCTTGTCGC 
    CTCTTCTTCT TCCTCCTCCG GCTCCGCTCC GCCGTAAATC CTCCTCCTCC 
    TCCTATATAA TCATCAAAAG CTTAGCTTAG CAGTAGGCCA GTAGCAGTAG 
    CGATGCCGTG ACGGATCCTC CACCACCACC ACCTCGATCG TCAAATCCTC 
    TAGCTTGTCT TTTGTTTTTG ATTGACGAGA CGAGCATGTC CGGCTCCGAC 
    CATCTCTTGG ACGCCCTCCT CGCCGCCGCC CGCGCCGCCC TTTCCCACCT 
    CCACCTTCCC TTTCCCGGAT CCAATCCCAA GCCCCACTAC TCTGATGACC 
    TCCATCTTCT TGGAGTTGGA GTAGCTCATT TCATCCACAG ATCCCCCCCC 
    TTCACAACTA GGGCATGCTT CCGCCGAACC AAACACCCAC CACCACCACC 
    ACCAGGTCCA CCACCGCACC AGCTCCTTCT CTGCATTGGC ATTGCCTTCC 
    ATAACCTGCT GGACAACCAT CTTCTCCACC ACTTCCACAC CCTACTCATC 
    CATGCAAACA AGCCCCATTT TGATGCCTTC CTCTCCAACC TGCCTTTTGC 
    CAAGCTTAAG GTTGCCCCAC CGCCTCAACC GTCTGCGTCT GTCTCCCCTG 
    CACCTCCAAC TCCAGCTCAA ACTGGGGACA AGGAAGACAC TGACACTGCT 
    GCTAATCACT CTCCACGGTC GACACTGCCT GTTCGCCTGC TCAACATCCC 
    TGTGGACCGC CTACGCTCCA CACTTTCCAC GCTTTCACTC ACCGACTTGA 
    TTGACCTGGT TGCCAGGTCC TTGCCATCCC CTGATACTCA TCCAGACAAG 
    AAGAAGCTCT TCTCTGTACA CGACTTCTTC AGATATGCGG AGTTTGAAGG 
    AAAGCGATTC TTTGAGGAGT TGGATAGAGA TGGTGATGGC CAAGTCACCC 
    TGGAAGACCT TGAAGTTGCA ATGAGAAAGA GGCGATTGCC AAGGAGGTAT 
    GCTCGGGATT TTTTACGGCG CACCAGAAGT AACTTGTTTT CAAAATCAAT 
    TGGGTGGAAA CAATTTCTAT CCTTGATGGA GCAGAAGGAG CCAACAATAT 
    TGCGGGCATA CACCACCCTA TGTTTGAGCA AGTCTGGGAC ACTTCACAAA 
    AATCAAATTC TCACATCTTT AAAAGGTGCA GGCCTTCCGG CCAATGAAGA 
    TAATGCTGCT GCCATGCTGC GGTACCTAAA TGCGGATTCA GAAGAATCAA 
    TCTCCTACAG CCATTTTCGC AATTTCATGC TCCTGCTTCC TTCAGAGCGC 
    CTTGAAGATG ACCCTCGGAA CATTTGGTTT GAAGCTGCTA CTTTGGTTGC 
    TGTTCCCCCA CCGGTAGAGA TATCAGCTGG GAGTGTTCTG AAGTCTGCTT 
    TAGCTGGAGG TCTTGCTAGT GCACTTTCTA CTTCCGTGAT GCATCCCATT 
    GATTCAATGA AGACACGTGT CCAAGCATCT TCGCTTTCAT TTCCAGATCT 
    CATATCAACA CTTCCACAAA TTGGGCTCCG AGGACTTTAT CGGGGTTCTA 
    TCCCCGCAAT TCTTGGTCAG TTTTCAAGCC ATGGTTTGAG AACAGGAATA 
    TTTGAGGCAA GCAAGCTTGT GTTAAAAAGT GTTGCTCCAA CACTTCCAGA 
    TATTCAGGTG CAATCACTCT CTTCCTTCTG CAGCACCATC CTGGGAACAG 
    CAGTCCGTAT ACCTTGTGAG GTTCTTAAGC AGCGTTTGCA GGCTGGAATC 
    TTCAATAATG TAGGGGAGGC CATTGTTGGT ACCATGCAAA AAGATGGTCC 
    AAAGGGCTTC TTCCGAGGCA CTGGAGCCAC TCTTTGCCGA GAGGTTCCTT 
    TCTATGTTGC TGGAATGTGT CTTTATGCAG AAGCTAAAAA GGCGGCACAG 
    CATGTGTTGA ACAGAGACTT GGAACCATGG GAAACTATTG CAGTGGGAGC 
    GTTGTCTGGA GGGCTTGCAG CAGTTGTCAC AACTCCCTTT GATGTGATGA 
    AGACTCGGAT GATGACTGCT CCACCAGGCA CCCCAGTCTC CATGCAGTTG 
    ATAGTTTTCT CCATCCTTCG AAATGAGGGA CCTCTCGGAC TGTTCAAGGG 
    TGCGATCCCC CGCTTCTTCT GGATTGCTCC TCTCGGAGCA ATGAACTTTG 
    CAGGCTATGA GCTCGCCAAG AAAGCAATGA TCCAAACTGA GAGTGACTCC 
    ACAGACTCTG TACATGAGAA GAGAACCACA GTGGGTTCCA GAGGATGACA 
    GATCCAAATT CACCTGGTTA CTCTATATGG TGTAAAGAAA GGACAAGCCA 
    TGCAACAGAA ATGTTTTTGC CCTTGTTGCA AAGAATTAGA ACCATTTTTT 
    GGCATTGCCT TCGTGATACA TGTACCAAAT GTTAGGTCCT TTTATATCCT 
    TCACATCCTC CCCAACAGAG GGAAATTTGT CGAATTCCCA TTACCATAGG 
    CCTTTATTAT ACCACTGTAT AGTAGATGAC AGAACTACAG GAGTAGACGT 
    GCTGCCCTTT CTTGCACAGT TCACTTCATC TGTTGTTATT TCTTTAGTAA 
    TCCAGAGCCT TGATGACATG TTTATT

    Gene models with high sequence identity

    1. AT2G35800.1 [+] show detail - mitochondrial substrate carrier family protein
      E-value: 0; Score: 681.00

     

    InterPro Scan Digest

    Program Description E-value
    FPrintScan Mitochondrial carrier protein 7.7e-06
    FPrintScan Mitochondrial carrier protein 7.7e-06
    FPrintScan Mitochondrial carrier protein 7.7e-06
    superfamily Mitochondrial substrate carrier 7.4e-61
    superfamily EF-hand 1.5e-16
    HMMPfam Mitochondrial substrate/solute carrier 5.8e-14
    HMMPfam Mitochondrial substrate/solute carrier 5.6e-11
    HMMPfam Mitochondrial substrate/solute carrier 2.8e-20
    Gene3D EF-hand-like domain 5.5e-12
    ProfileScan EF-HAND 2 11.835
    ProfileScan EF-HAND 2 6.201
    ProfileScan Mitochondrial substrate/solute carrier 17.3
    ProfileScan Mitochondrial substrate/solute carrier 14.897
    ProfileScan Mitochondrial substrate/solute carrier 19.703
    PatternScan EF-Hand 1, calcium-binding site 0
    HMMPanther MITOCHONDRIAL CARRIER PROTEIN 1.1e-117
    HMMPanther Mitochondrial substrate carrier 1.1e-117

    See the detailed result >

    AT2G35800.1

    Model type
    Protein coding
    Short Description
    mitochondrial substrate carrier family protein
    Computational Description
    mitochondrial substrate carrier family protein; FUNCTIONS IN: binding, calcium ion binding; INVOLVED IN: transport, transmembrane transport; LOCATED IN: mitochondrial inner membrane, chloroplast envelope; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Mitochondrial carrier protein (InterPro:IPR002067), EF-Hand 1, calcium-binding site (InterPro:IPR018247), EF-HAND 2 (InterPro:IPR018249), Mitochondrial substrate carrier (InterPro:IPR001993), EF-hand-like domain (InterPro:IPR011992), Mitochondrial substrate/solute carrier (InterPro:IPR018108); BEST Arabidopsis thaliana protein match is: Mitochondrial substrate carrier family protein (TAIR:AT2G26360.1); Has 17569 Blast hits to 12630 proteins in 423 species: Archae - 0; Bacteria - 12; Metazoa - 7266; Fungi - 5152; Plants - 3396; Viruses - 0; Other Eukaryotes - 1743 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR