K09333

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K09333

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K09333

Determination of introduced cDNA(s)

  • J023041C16 - Rice Full-length cDNAs - Original: J023041C16

    full reading [+] show sequence

    Nucleotide sequence: J023041C16 - full reading 
    GATCTTCGGT GTCTCTCCTC CGCCCGGCGG CTTCTGCTCG ACTCCACCGA 
    GCCGGAGGCG TTTCCTGGCA CGCGCCGCCG GCGACAAGCC CGGCAACCTC 
    CTCCTCCTCC TCCGCTGCGG CTGTGCTTCC TTTCCTGCTC GCGCGCACGG 
    GCCGGCGGCG GCGAGACGGT TCGGAGGCCG ACGCGGCCGA CGCCGATCCC 
    CTTTCAGCGT CCTCATTGCG GTTCGAATCG AAGGTATCCC CCCATTCTTC 
    CCTCGCATCC CTTCCTCCTC CGCAGCGCCG GCGTCCCGTA GATTGGAAAT 
    CCATCCGGAC TTGGGGATCG ATTTCGTTCC CTCCGGTTAA CCCATCCGGT 
    TTCTTCTCGA TTTTCTTGAT ATCTATGGAG TTGGTAGGGA CTTTCATAGA 
    GGGCGAAGTA TACGGGGCAG TGTGAAGTTC CCTGTTCGTT CAGCCATTCA 
    TACTTACATT TCTCAAGTCT TCAACAAGAT TTCACAGCTG TGTGACCTGT 
    ATTGTGTATT TAGGTTTACA ATGATGAGTG CGAAATTGCT CCGGAGCATG 
    AGCGTGAGGA GGCTCCTAGG ACAGCAAAGA AACTCAGTTG GTGGGCACTT 
    AGTTTTAGCC TTTCTAATGT TTGGTGTAAG GTGCTCATCT TGTGTATATA 
    AGTATAACTG AGAGTTTGGT GTCTGTTGCT TTTAGAGTTT TACAGAAAAT 
    CGCAAGCATG GAACTCGACT GCGTCTTTTT CTGATGTCGA TGAGAAGAAT 
    CGCAAGGGTG GTGATGCCGA AGATGATTTC ACACATTCCA GGCCAGATCA 
    CGTTTTCCGT GGTGTGCACA GGGTATTTTG ATGAAACGCG CACTCTTTGT 
    GAAAATGCAC TTTGTTTCTT AAGAAAAGAA TTGTGACCCT TGTTCATTTA 
    TCTGATACTT GATAGGCAAT TATTTGTGGA AAAGTTGGAC AAGTGCCAGT 
    ACAGAAAATA CTAAGAAACG GGCATACAGT AACTGTCTTT ACTGTTGGAA 
    CAGGTGGCAT GTTTGACCAG AGGACAGTAG GTGCTGAAAA CTTGCCAATG 
    CCAGCTCAGT GGCATCGAAT ATCTGTTCAC AATGAGCAGC TTGGTGCATT 
    TGCCGTTCAG AAGTTAGTCA AGAATTCTGC AGTCTACGTT GAGGGTGATA 
    TTGAGACCAG AGTCTACAAT GACAGAATTA ATGATCAAGT GAAAAATATA 
    CCAGAGATCT GTGTGCGGCG TGATGGTATG TATGCTAATC TGAAATTTTA 
    AATGAATACT CTCGTTTGTT CAAATCATTT TCCTGTAGCA ACACTGAATA 
    GTTGTTTTGG CTCATAAGCC ATGAGACGTG GCTGAAGCAA TGGAAAATAT 
    TTTTAGGATA GGAGTGGCCT ACCCAAATTC AGTATACATG TTTGTCTCGC 
    CTTGAACTGT GGTCATATAA TTTCCTAGTT CTTGTCATTG TCACTCTCTA 
    TAGATGTTAT AATGTTCTGC TCCTTCTTTA TCTGTGTATA AGCTTTCGTG 
    TTTGTTTTTT TAATCTGTGC AGGGAAGATT CAGTTGATGC AATCTGGTGA 
    TAGCAATGTT GGCAAATCAT TGGAGGAGTT AAGGGAAGGA TTATTCTAGT 
    TGTGAAGCAA AGGGTGATCA GCAAAAGTAG GCAGAGCCGG GGAAATGGAA 
    TGTTTTGTTC GCTCCTCTTG CGCAAAGATC TGGGAGTAAT TTTTGTTAGT 
    TTGAGCAGTA GTAAGATTAC ATGAAGGTCC ACATGCACTT CTGTATCCAA 
    ATAATGTGCT TCATGTTCTT TTATGTCATT TTAGCAGATG ACGATACCGT 
    TCTAATTTAG ATTATGTAGT AAATCATTCT GTATCCTTTT TTTTTCCTTT 
    ACCTTGTCTC TTGGAAGAGG ACAGAACTGG AGGTATCACC ATGGTCCAAC 
    TTTCATGCGT TTGTGCTTGT GCGTGAAAGT CACATGAAAG AGCAGTTATG 
    TTTGCTGTTA ATATGGTTAC TGTATCATCT CTAAGATTGG TT

    Gene models with high sequence identity

    1. AT4G11060.1 [+] show detail - mitochondrially targeted single-stranded DNA binding protein
      E-value: 3e-37; Score: 154.00

     

    InterPro Scan Digest

    Program Description E-value
    ProfileScan Primosome PriB/single-strand DNA-binding 0
    HMMPfam Primosome PriB/single-strand DNA-binding 2.4e-15
    Gene3D Nucleic acid-binding, OB-fold 4.0999959904575e-13
    superfamily Nucleic acid-binding, OB-fold-like 2.1e-15

    See the detailed result >

    AT4G11060.1

    Model type
    Protein coding
    Short Description
    mitochondrially targeted single-stranded DNA binding protein
    Computational Description
    mitochondrially targeted single-stranded DNA binding protein (MTSSB); FUNCTIONS IN: single-stranded DNA binding; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold (InterPro:IPR012340), Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Primosome PriB/single-strand DNA-binding (InterPro:IPR000424); BEST Arabidopsis thaliana protein match is: Nucleic acid-binding, OB-fold-like protein (TAIR:AT3G18580.1); Has 3842 Blast hits to 3842 proteins in 1060 species: Archae - 0; Bacteria - 2446; Metazoa - 112; Fungi - 0; Plants - 68; Viruses - 25; Other Eukaryotes - 1191 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR