K09525

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K09525

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased length (PATO:0000573)
    (Seed::Shape::long)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K09525

Determination of introduced cDNA(s)

  • J013014E16 - Rice Full-length cDNAs - Original: J013014E16

    full reading [+] show sequence

    Nucleotide sequence: J013014E16 - full reading 
    GAGTCAGCTA TAGTGGCTTC TAACGCAAAC AAGCGAAGCG TCCGAAGAGA 
    CGCGACGCGT GGCACAGTAC TCTAGCTAGC TACCGCCTCC CAAGGAAGAG 
    GAGAAATCGA AGGCATCCAA CCATTCGTCA TGCATCTAGC TTCCACAAAC 
    TTTCGATCGA TTTCACTACA AGAAGAACCC TAGTTAGTTA GCAAGTATAA 
    TTAGCTCACT AGCTAGTACT AGCAGCCATG GTTGTTCAAT TGATGCTCTT 
    CTTCCATGAC AAATTCATGG CTCCAATGGC AGAGGAGCCA CTGCCCTTCG 
    TCCTCATCAT GATCATCATC TTGCCGCTGC TGGTGCTTCT TCACTACTAC 
    CTGTCTGCAT CAACCAGAAG ATCATCGGCG GCGAGCAAGA GCAACGATGA 
    TGTCCTGCCA CCGTCGCCTC CGAGGCTGCC GGTGATAGGC CACATGCACC 
    TCGTCGGCTC CAACCCTCAC GTCTCCCTCC GCGACCTCGC CGAGAAGCAC 
    GCCGCCGACG GCTTCATGCT CCTCCAGCTC GGCCAGGTGC GCAACCTCGT 
    CGTCTCGTCC CCGCGCGCCG CCGAGGCCGT CCTCCGGGCT CACGACCACG 
    TGTTCGCGTC GCGGCCGCGC TCCGCCATCG CCGACATCCT CGCCTATGGC 
    TCCTCCAACA TCTCCTTCTC CCCCTACGGC GACTACTGGC GCAAGGCGAG 
    GAAGCTCGTC GCCGCCCACT TGCTCAGCCC CAAGAAGGTC CAGTCGCTCC 
    GCCGTGGCCG CGAGGAGGAG GTGGGCATCG CCGTCGCCAA GCTCCACGAG 
    GCGGCGGCCG CGGGCGCCGC CGTCGACATG AGGGAGCTGC TCGGCTCCTT 
    CACCAACGAC GTCCTGTGCC GCGCCGTGTG CGGGAAGTCG TCGTTCCGGC 
    GAGAAGGCCG GAACAAGCTG TTCATGGAGC TCGCCGCCGG CAACGCTGAT 
    CAGTACGCTG GCTTCAACCT GGAAGACTAC TTCCCGAGCT TGGCGAAGGT 
    GGATCTGCTG AGGCGAGTGG TGAGCGCCGA CACCAAGAAG CTCAAAGAGA 
    AGTGGGACAG TGTTCTTGGT GACATCGTAA GCGAGCATGA AAAGAAATCG 
    TCGCTGCGTC GTGACGATCA AGTACAGATG GATGATGACC GTGATGATGA 
    TCAGGAGGAG CAAGAGTCAG ATTTCGTTGA TATTCTGCTC GATCGTCAAC 
    AGGAGTACAA TCTAACCAGG CACAATATCC ATGCCATATT GATGGTAATT 
    AATCACTTAT ACATATGTTC TTCTGAATTT TTCTTTCTTT TTTACTATTA 
    ATTCTATCAT CTAGATTAAT CGAAAATTAG GTAATTGAGT TTTGTACATG 
    TGTTTCTTCC AAACAACGTT AATATAATAT ATATATTTTG AGTTG

    Gene models with high sequence identity

    1. AT3G48300.1 [+] show detail - cytochrome P450, family 71, subfamily A, polypeptide 23
      E-value: 1e-33; Score: 141.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily Cytochrome P450 1.3e-42
    HMMPfam Cytochrome P450 1e-25
    HMMPanther CYTOCHROME P450, SUBFAMILY 71C 3.9e-117
    HMMPanther Cytochrome P450 3.9e-117
    Gene3D Cytochrome P450 1.7e-38

    See the detailed result >

    AT3G48300.1

    Model type
    Protein coding
    Short Description
    cytochrome P450, family 71, subfamily A, polypeptide 23
    Curator Summary
    putative cytochrome P450
    Computational Description
    "cytochrome P450, family 71, subfamily A, polypeptide 23" (CYP71A23); FUNCTIONS IN: electron carrier activity, monooxygenase activity, iron ion binding, oxygen binding, heme binding; INVOLVED IN: oxidation reduction; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, E-class, group I (InterPro:IPR002401), Cytochrome P450, conserved site (InterPro:IPR017972); BEST Arabidopsis thaliana protein match is: cytochrome P450, family 71, subfamily A, polypeptide 26 (TAIR:AT3G48270.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR