K09530

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K09530

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K09530

Determination of introduced cDNA(s)

  • J013058D09 - Rice Full-length cDNAs - Original: J013058D09

    full reading [+] show sequence

    Nucleotide sequence: J013058D09 - full reading 
    GAGCTTGGCT CGCCTCTGCT CCGCTTCGCC TTTGCTCCGA CCCGGTCGGC 
    CTCGCCGCCG TCGCCGCCGC CACCGCATCA CGCGCGCGCG CGCGCGACGG 
    CGCGAGCGCA CGGGTGAGGT GAGAGAGGGG TAGTAGAGCA GCAGCCGCCC 
    CCGACCGCCC ACGCCCGGGC CGGGTGGTGG AGCACACCGT GGCATGATTG 
    GGTCCATGGC CTCCTGACCC CGCCTCCCTC TCCTCCTCCT CTGCTCCCCT 
    TTTGCTGCTG TTGCTGCTTC CTACTCTCAC TCTGCTTCTG CTGCTCAATC 
    CACCTGCTCC TCTCCTTCTC TTCTCTCTCC CGAGCGGCCG AGAAGAGGCG 
    AGGGGAGAAG GGAGGACTTG ATTCTTGCTT GTTGTTGATC CATTCTTTCT 
    TGCTCTGCTC TGCTCTTGTG TGGTGTGTGT GTCCAGGCTT GCCGCATTAA 
    AGGAGAGGTG GTTTTTGTTG ACCCTGTTTA GCAGCAGCAG CAGCAGCAGC 
    GACCAAGATC CGTCTCGTCG GGGAAGATGA GGAGATCTGC ATCTCTACTC 
    CGAGTCCTTT TGGTTTTCAT AACCATGGTT GGGACTCAAT GGTCCAATGT 
    ATCCAGTACA TACTGCAAGG ACATGGCATC AAGCGTATAT CGACCCCACA 
    GTGTCACAAT AACTGAATTT GGTGCTGTTG GGGATGGTGT GACTCTCAAT 
    ACCAAAGCAT TCCAGAACGC AATCTTCTAC CTCAATTCAT TTGCAGACAA 
    GGGTGGCGCA CAGCTCTTCG TGCCTGCGGG AAGGTGGCTG ACAGGGAGTT 
    TTAGTCTTAT CAGCCATCTC ACTTTGTCAC TGGATAAGGA TGCAGAAATA 
    ATTGGATCTC CGGATTCATC CGATTGGCCA GTCATTGATC CTCTTCCATC 
    CTATGGGCGA GGTAGAGAGC TCCCTGGAAA AAGACATCAG AGTCTAATTT 
    TTGGAACTAA TCTAACAGAT GTAATAATTA CTGGCGCTAA TGGTACCATT 
    GATGGCCAGG GAGCCATTTG GTGGGATTGG TTCCACAGCA ACACACTGAA 
    TTATACTAGG CCACATCTTG TTGAGTTGAT GTACTCCACC GATGTTGTTA 
    TATCCAATTT AACCTTCAAG AACTCACCGT TTTGGAATAT CCATCCTGTA 
    TACTGCAGCC AAGTGCTTGT CCAGCATGTC ACAATCCTAG CGCCCCTGAA 
    TTCACCGAAC ACTGATGGCA TTGATCCAGA TTCGTCCACA AATGTCTGCA 
    TTGATCATTG TTATGTCAGA AATGGAGATG ATGTTATTGT CATAAAAAGT 
    GGGTGGGATG AGTATGGCAT TTCCTTTGCT CGTCCTAGCA CAAACATCAG 
    TATCAGCAAC ATCACAGGAG AGACAAGGGG TGGTGCAGGG ATTGCCTTTG 
    GAAGTGAGAT GTCAGGTGGC ATATCCGAAG TCCGGGCTGA GGGTCTCCGC 
    ATCGTCAACT CAATGCACGG GATCAGAATC AAGACCGCTC CAGGGCGTGG 
    AGGGTATGTG AAGAACGTGT ACATATCTGA TGTGAGCATG GACAATGTTT 
    CGATGGCCAT CAGGATCACC GGAAACTTTG GTGAACATCC TGATGACAAA 
    TATGATAGAA ATGCTCTCCC AATGATAAGC AATATTACAA TCGAAAATGT 
    GGTCGGCGTC AATGTTGGTG TCGCTGGCAT CTTGGAAGGA ATTGAGGGGG 
    ACAACTTCAG CAGCATTTGC CTGTCCAATG TTTCCCTCAG TGTACAGTCT 
    ATGCATCCCT GGAATTGTTC GCTTATCGAA GGTTATTCAA ACTCTGTGAT 
    CCCAGAGTCA TGTGAGCAAC TCAGAACAGA TTGTGGACAG ACACCAATTT 
    GCTATGATGG TGGAAGTTCT TCAGCAATAC ATGCACAGGC AGCCAGACAT 
    AGATTGTCGA GTGCCAGCAG ATTGCTAAAT CCTTTACTGA AGTTGGCGAT 
    GCTGTAGAGT AGGTAGAGAG ATGCTCTATT TATTTGCTGC AGAGGGGCTT 
    TTGCTTCGTG GGATGCGTCA TGTACATCTG ATTCTTGCGA TTGTTTTTTT 
    TTTATTAGCA CGATGTTTGC TTCTTGTATA TAGTTGTGGG AGATGAATGT 
    TGGTGTACCA TGCATGTTTT TGTCACCATC TTTGATTTGT GATGTATCTG 
    TTCCATAGCC TTTTGTTGGG AAGAAAACAG TATGATCCTC CTTCCAATAT 
    GTCCAGTTTT GTGGATAGGG TCATCAAAAT TGTAACTTGT AAGTTGAGTA 
    GCAACAAGAG AGAAGAGTCA GTTTTAATC

    Gene models with high sequence identity

    1. AT3G62110.1 [+] show detail - Pectin lyase-like superfamily protein
      E-value: 1e-164; Score: 577.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily Pectin lyase fold/virulence factor 2e-97
    HMMSmart Parallel beta-helix repeat 2200
    HMMSmart Parallel beta-helix repeat 690
    HMMSmart Parallel beta-helix repeat 850
    HMMSmart Parallel beta-helix repeat 2400
    HMMSmart Parallel beta-helix repeat 640
    HMMSmart Parallel beta-helix repeat 8400
    HMMPfam Glycoside hydrolase, family 28 1.6e-43
    Gene3D Pectin lyase fold 2.9e-105

    See the detailed result >

    AT3G62110.1

    Model type
    Protein coding
    Short Description
    Pectin lyase-like superfamily protein
    Computational Description
    Pectin lyase-like superfamily protein; FUNCTIONS IN: polygalacturonase activity; INVOLVED IN: response to cyclopentenone, carbohydrate metabolic process; LOCATED IN: vacuole; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Pectin lyase fold/virulence factor (InterPro:IPR011050), Glycoside hydrolase, family 28 (InterPro:IPR000743), Pectin lyase fold (InterPro:IPR012334), Parallel beta-helix repeat (InterPro:IPR006626); BEST Arabidopsis thaliana protein match is: Pectin lyase-like superfamily protein (TAIR:AT4G23500.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR