K09835

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K09835

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Original: K09835

Determination of introduced cDNA(s)

  • J023095H23 - Rice Full-length cDNAs - Original: J023095H23

    full reading [+] show sequence

    Nucleotide sequence: J023095H23 - full reading 
    GTTCGGCTCG CACATGGTTC GCCGCCTTTC GGTGAGATCC CCGCGGCTGC 
    AGCGAGCTCG CAGGCCGCCG CCTTCCGCGC CGCCGACCAC CGCGCCCATG 
    GACCCCCCCT CGCCGCCGCC GCCGCCGCCA TATCCTCCTG CTGCTGCTGA 
    GGGCGGTCCG GCAGCGGATA GCCAGGCCGC TGAGCTGCCC CGGCTGACTG 
    TGACGCAGGT GGAGCAGATG AAGGTGGAGG CGAAGGTGGG CGAAATCTAC 
    CGCGTCCTCT TCGGCAACGC GCCCAACGCC AATTCCCTCA TGTTAGAGCT 
    GTGGCGTGAG CAGCATGTTG AGTATTTGAC GAGAGGGCTG AAACATCTTG 
    GACCAAGCTT CCATGTGCTC GATGCCAAGT AATGGTTCTC CGGTATTGAA 
    TTATATAGCA GAATATGGTT TTAAAATGAG ATTATGCGAA GTTGATGTAT 
    ATATTTGGTT TTAAAATTAT GTTCTAGTCG ACCTTGGCTG TGCTACTGGA 
    TTATTCATGC ACTTGCTCTG TTGGATGAAA TACCTGACGA TGTTGAGGAT 
    GATATTGTGG ACTTCTTATC TCGATGTCAG GTTTGTTAAA CTGCTGGTAT 
    TATATAAAAA AATGTTACTC TTACTACATA AATATGCATT AGTTACCACT 
    CTTCATGCGT CTGTAAAGAA ACCAACTCAA CAAGTCAATT TTTCAGTACT 
    TTGTTCTTTC CTTTACTGAG GTGATAACAA AGTTCAATCG AAGAAATAGT 
    TCCACTAGAT TTCTAAGGTC TTGTGGAATT TTTAAAGTCT CAAGCTGGGT 
    GTCTGAATGA ATCTTCTGAA CCCACATGTA ACTTTTCATG CATATCAAGG 
    ATAGCACAAC TATCTTTGTT CTGCTCCACT TAGTTAGTTC ATGTTATCCC 
    TTTCCTTTCT CATAAAGTGT TCGGTACAAC ATGAATTTGC TTATGGATAC 
    ATAGCAAATA ACTGAAGATA TTGATTTGCA CATACATGTG ATTCTGAAGA 
    TTTCATTGCC ATTATTATCA TGATTCTTTC AGGACAAAGA TGGTGGTTAT 
    GGCGGAGGAC CTGGACAGGT TTTCTCTTAA CCTCAAACTT TTGGGTTCCA 
    AACTTGTGGC TGGGTAATAT AGCTTTGAGT TGGTTAACAT TTCACATTAG 
    TTGTCGTTAT CTTAGGCAAT ACAAAACTTC AACAAACCAT GTGAACACTG 
    ATCTTTTGCT TCAAATGACT AGATGGGCCA GTCTAGGCTA CTCAACATCT 
    ACCCTAACTA AATTGACCAT CTCAAACAAG TTCGATGTGA TGAAATATCT 
    GAAGATCAAT TTATCTTTGG GTATTTGATG GCCTAAAGTG TTTATATAAC 
    TACAGGTTCT CATTTTGATG GCAAAGTTAG TGCTTTGACT TGTGTTATCC 
    AACTCGTGCA AACTTTAGAA TAGTCAATCT TGACTGTTCT TTGATCTTCC 
    TAATTTGAGT TCAGTTTTAC GAACTCACTC GATAAGGTTA ATTTAGTATG 
    AGGCGAATTT TTTGATGTCA ATTTCACTTC TTTGTGCTAG TTGCCTCATC 
    TCGCTACAAC TTATGCTGCT GTAAATACAC TTGTAACTAT AGGGAGTGAA 
    AGGGCACTAT CATCGGTAAA CAGGGACAAC CTGTACAAGT TCATGCTTCG 
    GATGAAAGAT ACATCGGGAG CTTTCAGAAT GCATGATGGT GGTGAAATAG 
    ATGTTCGTGC TAGCTATACT GCAATATCGG TTGCCAGCCT TGTGAACATT 
    CTTGATGGTG AACTAGCAAA AGGTGTTGGA AATTACATAA CAAGGTGTCA 
    AACCTATGAA GGTGGCATTG CTGGGGAACC GTATGCTGAA GCTCATGGTG 
    GGTATGTTTC AACGGAGGAT CTCTGTTTTT TTTTATTTTT CCTGTATGTA 
    TCTATTTGGA TCTTTTAAGT AATAGTTGCT TTGGTTTGAC AAGGTACACT 
    TTTTGTGGGC TGGCTACGAT GATCCTGCTT AACGAAGTGG ACAAACTTGA 
    TTTGGCTAGC TTGATTGGCT GGGTGGCATT TCGCCAAGGA GTGGAATGTG 
    GATTTCAAGG ACGAACTAAT AAATTGGTTG ATGGTTGCTA CTCCTTTTGG 
    CAGGGAGCTG CTCTTGCTTT AACACAAAAA CTAATGACAG TTGTTGATGA 
    GCAATTAAAA TCATCATATT CCAGCAAAAG GCCTCCAGGA GATGATGCTT 
    GTGGTACGAG CTCTTCTACT GAAGCAGCAT ATTATGCTAA GTTTGGATTT 
    GATTTTATAG AGAAGAGCAA CCAAATAGGC CCACTGTTCC ACAACATCGC 
    GCTGCAGCAA TACATCCTGC TTTGCGCACA GGTGCTGGAT GGAGGGTTGA 
    GGGATAAGCC TGGGAAGAAC AGAGATCACT ACCACTCGTG CTACTGCCTG 
    AGTGGTCTGT CAGTTAGCCA GTACAGCGCC ATGGTTGATT CTGATGCGTG 
    CCCCTTGCCG CAGCACGTGC TTGGTCCTTA CTCAAACTTG CTAGAGCCGA 
    TCCATCCGCT CTACAATGTT GTACTAGACA AATACCATAC GGCCTATGAG 
    TTCTTTTCAA GCTAGTGATA CAACTGTCTA GGACATGTAT GATATGTATG 
    AGCTCTACAA TGTTGCGCCT TACAAGTTAC AACTGTCTAA GACATGTATG 
    ATATTTCATT CTTTTTTACA CTGACTGAAC GGCCCCAGAT ACCAAAAGTC 
    CATATAAACT CGC

    Gene models with high sequence identity

    1. AT5G40280.1 [+] show detail - Prenyltransferase family protein
      E-value: 1e-91; Score: 159.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily Terpenoid cylases/protein prenyltransferase alpha-alpha toroid 6.7e-45
    superfamily Terpenoid cylases/protein prenyltransferase alpha-alpha toroid 2.4e-30
    HMMPfam Prenyltransferase/squalene oxidase 8.1e-09
    HMMPfam Prenyltransferase/squalene oxidase 4.2e-08
    HMMPfam Prenyltransferase/squalene oxidase 2.4e-05
    HMMPanther PROTEIN FARNESYLTRANSFERASE BETA SUBUNIT (CAA 2e-58
    HMMPanther GERANYLGERANYL TRANSFERASE TYPE BETA SUBUNIT 2e-58
    HMMPanther PROTEIN FARNESYLTRANSFERASE BETA SUBUNIT (CAA 6.2e-56
    HMMPanther GERANYLGERANYL TRANSFERASE TYPE BETA SUBUNIT 6.2e-56
    Gene3D no description 4.8e-51
    Gene3D no description 4.7e-34

    See the detailed result >

    AT5G40280.1

    Model type
    Protein coding
    Short Description
    Prenyltransferase family protein
    Curator Summary
    encodes a beta subunit of farnesyl-trans-transferase, which is involved in meristem organization and ABA-mediated signal transduction pathway. Mutant phenotypes have been observed in meristem organization, and response to abscisic acid and drought.
    Computational Description
    ENHANCED RESPONSE TO ABA 1 (ERA1); CONTAINS InterPro DOMAIN/s: Terpenoid cylases/protein prenyltransferase alpha-alpha toroid (InterPro:IPR008930), Prenyltransferase/squalene oxidase (InterPro:IPR001330); BEST Arabidopsis thaliana protein match is: RAB geranylgeranyl transferase beta subunit 2 (TAIR:AT3G12070.2); Has 2257 Blast hits to 1610 proteins in 263 species: Archae - 4; Bacteria - 30; Metazoa - 707; Fungi - 630; Plants - 303; Viruses - 4; Other Eukaryotes - 579 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR